chr4 : 17,517,732 – 17,518,059
327 bp 52 TFs 1 linked gene
This 327 bp open chromatin element is linked to QDPR and is bound by 52 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
QDPR 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:17,512,732 – 17,523,059
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 13 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 253 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 211 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 171 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 158 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 147 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 236 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 237 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 234 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 245 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 199 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 122 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 226 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 281 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 218 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 208 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 217 bp overlap
ESR1 3 datasets
ChIP T-47D-B_E2_R5020 GSE80358.ESR1.T-47D-B_E2_R5020 213 bp overlap
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 230 bp overlap
ChIP T-47D_R5020 GSE68355.ESR1.T-47D_R5020 238 bp overlap
EZH2 2 datasets
ChIP T98G GSE112240.EZH2.T98G 99 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 327 bp overlap
FOXA1 9 datasets
Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 125 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 201 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 207 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 252 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 127 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 273 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 160 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 298 bp overlap
FOXA2 1 dataset
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXD1 1 dataset
Motif DE_12h DE_12h-FOXD1_MA0031.2 7 bp overlap
FOXG1 1 dataset
Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXK1 1 dataset
Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap
Foxo1 1 dataset
Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 157 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 179 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 219 bp overlap
HNF4A 1 dataset
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 249 bp overlap
HNF4G 1 dataset
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 97 bp overlap
HOXB13 8 datasets
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 300 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 177 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 170 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 145 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 179 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 165 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 178 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 198 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 206 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 317 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 231 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 133 bp overlap
NR3C1 6 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 287 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 327 bp overlap
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 286 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 243 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 327 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 228 bp overlap
PGR 13 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 265 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 177 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 315 bp overlap
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 231 bp overlap
ChIP T-47D-A_R5020 GSE80358.PGR.T-47D-A_R5020 138 bp overlap
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 226 bp overlap
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 217 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 314 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 315 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 280 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 327 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 205 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 181 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 108 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 168 bp overlap
PRDM14 1 dataset
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 173 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 327 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 159 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 327 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 315 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 327 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 198 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 139 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 291 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 194 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 179 bp overlap
U2AF1 2 datasets
ChIP Hep-G2 ENCSR868JLS.U2AF1.Hep-G2 168 bp overlap
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 195 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 72 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 80 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 94 bp overlap
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