chr3 : 190,968,689 – 190,969,009

320 bp 57 TFs 0 linked genes

This 320 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

57 transcription factors

ARNT::HIF1A 2 datasets

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 320 bp overlap

Bcl11B 1 dataset

Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap

ELL2 1 dataset

ChIP HeLa GSE40632.ELL2.HeLa 191 bp overlap

ESR1 3 datasets

ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 207 bp overlap

ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 152 bp overlap

ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 278 bp overlap

ESRRA 2 datasets

Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap

Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap

ESRRB 2 datasets

Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap

Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

Esrrg 2 datasets

Motif DE_12h DE_12h-Esrrg_MA0643.2 9 bp overlap

Motif ES_0h ES_0h-Esrrg_MA0643.2 9 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 197 bp overlap

ChIP A-673_D14 GSE129155.FLI1.A-673_D14 178 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap

GRHL2 5 datasets

ChIP HBE GSE46194.GRHL2.HBE 202 bp overlap

ChIP MCF-7 GSE109820.GRHL2.MCF-7 189 bp overlap

ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 146 bp overlap

ChIP PEO1 GSE71018.GRHL2.PEO1 145 bp overlap

ChIP T-47D GSE99680.GRHL2.T-47D 244 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

IRF9 1 dataset

Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap

KLF4 2 datasets

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap

MYB 1 dataset

Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap

Msgn1 1 dataset

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

NANOG 2 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 320 bp overlap

ChIP hESC GSE18292.NANOG.hESC 122 bp overlap

NEUROD1 1 dataset

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 168 bp overlap

NKX6-1 1 dataset

Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap

NR1H2::RXRA 2 datasets

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

Motif ES_0h ES_0h-NR1H2RXRA_MA0115.1 17 bp overlap

NR5A1 2 datasets

Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap

Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap

NR6A1 2 datasets

Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap

Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 143 bp overlap

Nr2F6 1 dataset

Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap

Nr5A2 2 datasets

Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap

Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap

OSR2 1 dataset

Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap

POLR2A 1 dataset

ChIP vagina ENCFF305NWS 120 bp overlap

POU5F1 2 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 320 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap

Prdm5 2 datasets

Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap

Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap

RARA 1 dataset

Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap

REST 2 datasets

Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap

Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap

RFX5 4 datasets

ChIP H1 ENCFF605EGG 320 bp overlap

ChIP MCF-7 ENCFF983ILY 282 bp overlap

ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 320 bp overlap

ChIP WA01 ENCSR000ECF.RFX5.WA01 294 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

Rarg 1 dataset

Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap

SIX1 1 dataset

Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap

SIX2 1 dataset

Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 180 bp overlap

SP4 2 datasets

Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap

Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap

SP5 2 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

Stat6 1 dataset

Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap

TCF12 1 dataset

ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 95 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

TRIM28 1 dataset

ChIP WA01 GSE78099.TRIM28.WA01 143 bp overlap

ZNF263 2 datasets

Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap

Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap

ZNF331 2 datasets

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 222 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 135 bp overlap

ZNF549 1 dataset

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

ZNF616 1 dataset

ChIP HEK293T GSE78099.ZNF616.HEK293T 304 bp overlap

ZNF667 2 datasets

Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap

Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap

ZNF675 1 dataset

Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap

ZNF677 2 datasets

Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap

Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap

ZNF766 1 dataset

ChIP HEK293T GSE78099.ZNF766.HEK293T 125 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap

Znf423 2 datasets

Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap

Motif ES_0h ES_0h-Znf423_MA0116.1 15 bp overlap