chr3 : 187,764,352 187,764,562
210 bp 57 TFs 0 linked genes
This 210 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:187,759,352 – 187,769,562
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 62 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 140 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 178 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 210 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BRD2 2 datasets
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 108 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 96 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 187 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 166 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 129 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 94 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 125 bp overlap
ESR1 7 datasets
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 57 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 111 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 160 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 111 bp overlap
ChIP T-47D ENCSR000BQD.ESR1.T-47D 115 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 132 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 165 bp overlap
FOXA1 12 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 79 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 210 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 194 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 142 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 147 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 180 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 205 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 129 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 210 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 172 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 71 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 149 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 79 bp overlap
ChIP DE DE-FOXA2-2 133 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 203 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
GATA3 2 datasets
ChIP Kelly GSE94822.GATA3.Kelly 210 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 131 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 95 bp overlap
ChIP DE DE-GATA4-2 148 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 210 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 210 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 104 bp overlap
ChIP DE DE-GATA6-2 101 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 184 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 210 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 210 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 210 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 210 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 210 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 210 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 210 bp overlap
MED1 3 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 158 bp overlap
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 68 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 94 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 68 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 210 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 172 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 210 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 210 bp overlap
ChIP hESC GSE20650.NANOG.hESC 155 bp overlap
NR3C1 3 datasets
ChIP HCC70 GSE152203.NR3C1.HCC70 195 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 171 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 210 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 210 bp overlap
PGR 7 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 155 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 210 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 182 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 179 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 184 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 184 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 156 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 210 bp overlap
POLR2A 1 dataset
ChIP suprapubic skin ENCFF748PRQ 210 bp overlap
POU2F1 3 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 210 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 210 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 183 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 177 bp overlap
POU5F1 4 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 210 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 210 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 210 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 120 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
ChIP HCC1599 GSE116871.RBPJ.HCC1599 210 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 193 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 72 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 195 bp overlap
SMAD3 1 dataset
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 210 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 210 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 166 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 155 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
STAT3 21 datasets
ChIP A-137 GSE85579.STAT3.A-137 210 bp overlap
ChIP A139 GSE85579.STAT3.A139 191 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 210 bp overlap
ChIP HCC1937 GSE152203.STAT3.HCC1937 155 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 210 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 210 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 177 bp overlap
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 210 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 174 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 210 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 210 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 210 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 131 bp overlap
ChIP T-47D_JC4737 GSE126004.STAT3.T-47D_JC4737 188 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 194 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 210 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 171 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 210 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 210 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 210 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 210 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 210 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 210 bp overlap
TEAD4 5 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 174 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 210 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 175 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 142 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 174 bp overlap
TFAP2A 3 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 155 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 210 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 6 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 202 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 187 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 186 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 210 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 145 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
TP53 1 dataset
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 148 bp overlap
TP63 7 datasets
ChIP JHU-029 GSE88859.TP63.JHU-029 210 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 210 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 210 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 210 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 210 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 210 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 183 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 163 bp overlap
YY1AP1 1 dataset
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 115 bp overlap
ZIM3 1 dataset
ChIP HEK293T GSE78099.ZIM3.HEK293T 109 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap