chr3 : 164,730,753 – 164,731,285
532 bp 65 TFs 1 linked gene
This 532 bp open chromatin element is linked to LINC01324 and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01324 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:164,725,753 – 164,736,285
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
Ahr::Arnt 1 dataset
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 230 bp overlap
BRD4 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 441 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 216 bp overlap
E2F7 2 datasets
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
Motif DE_36h DE_36h-E2F7_MA0758.1 14 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif DE_36h DE_36h-EBF1_MA0154.5 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 174 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 520 bp overlap
ChIP neural cell ENCFF442QNK 419 bp overlap
ERF::FOXO1 2 datasets
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_36h DE_36h-ERFFOXO1_MA1936.2 12 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 252 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 186 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
FLI1 1 dataset
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 208 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif DE_36h DE_36h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_36h DE_36h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 2 datasets
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 285 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 222 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 340 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 234 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-2 265 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 461 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 252 bp overlap
ChIP foregut GSE117136.GATA4.foregut 364 bp overlap
GATA5 2 datasets
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 350 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 485 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 324 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 427 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 342 bp overlap
GRHL2 2 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap
Gata3 2 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HSF1 1 dataset
ChIP BPE GSE38901.HSF1.BPE 199 bp overlap
ISL2 2 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 532 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 214 bp overlap
Mecom 2 datasets
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 240 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 122 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
NFIC 3 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
Motif DE_36h DE_36h-NFIC_MA0161.3 7 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 130 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
NR1H4::RXRA 1 dataset
Motif DE_12h DE_12h-NR1H4RXRA_MA1146.2 13 bp overlap
Nkx3-1 2 datasets
Motif DE_12h DE_12h-Nkx3-1_MA0124.3 7 bp overlap
Motif DE_36h DE_36h-Nkx3-1_MA0124.3 7 bp overlap
ONECUT1 2 datasets
Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_36h DE_36h-ONECUT1_MA0679.3 9 bp overlap
ONECUT3 2 datasets
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
Motif DE_36h DE_36h-ONECUT3_MA0757.2 12 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 303 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 297 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 315 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 300 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 386 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 175 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 422 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 190 bp overlap
SOX18 2 datasets
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 409 bp overlap
SOX8 2 datasets
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
SPDEF 2 datasets
Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap
Motif DE_36h DE_36h-SPDEF_MA0686.2 10 bp overlap
SRY 2 datasets
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
Motif DE_36h DE_36h-SRY_MA0084.2 7 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 213 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 104 bp overlap
TAL1 4 datasets
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 233 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 237 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 208 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 254 bp overlap
TEF 2 datasets
Motif DE_12h DE_12h-TEF_MA0843.2 10 bp overlap
Motif DE_36h DE_36h-TEF_MA0843.2 10 bp overlap
TRPS1 2 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 198 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 189 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 93 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 294 bp overlap
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