chr3 : 161,552,855 – 161,553,599

744 bp 95 TFs 0 linked genes

This 744 bp open chromatin element has no linked target genes and is bound by 95 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

95 transcription factors

AR 1 dataset

ChIP prostate_DHT GSE61838.AR.prostate_DHT 130 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

ATOH7 1 dataset

Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CDX2 1 dataset

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 721 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

ELF1 1 dataset

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 267 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

FLI1 2 datasets

ChIP A-673_D14 GSE129155.FLI1.A-673_D14 237 bp overlap

ChIP A-673_D17 GSE129155.FLI1.A-673_D17 516 bp overlap

FOXA1 1 dataset

ChIP MCF-7 ERP001226.FOXA1.MCF-7 130 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 379 bp overlap

ChIP DE DE-FOXA2-2 475 bp overlap

Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap

FOXG1 1 dataset

Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP2 1 dataset

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

FOXS1 1 dataset

Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxj3 1 dataset

Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

GABPA 1 dataset

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

GATA1::TAL1 1 dataset

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

GATA3 1 dataset

ChIP T-47D ENCSR000BMX.GATA3.T-47D 163 bp overlap

GATA4 3 datasets

ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 262 bp overlap

ChIP DE DE-GATA4-1 389 bp overlap

ChIP DE DE-GATA4-2 525 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 315 bp overlap

ChIP DE DE-GATA6-2 368 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 703 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 568 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 577 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 331 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 698 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 703 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

Gli1 1 dataset

Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap

Gli2 1 dataset

Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 481 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 312 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 450 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 481 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

LIN54 1 dataset

Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap

MITF 4 datasets

ChIP 501-mel GSE137522.MITF.501-mel 147 bp overlap

ChIP 501-mel GSE61965.MITF.501-mel 98 bp overlap

ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 180 bp overlap

ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 126 bp overlap

MRTFB 1 dataset

ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 259 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MYOD1 1 dataset

ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 294 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 2 datasets

ChIP WA01 ERP004238.NANOG.WA01 258 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 203 bp overlap

NEUROD1 1 dataset

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 143 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

OLIG1 1 dataset

Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

REST 2 datasets

ChIP PFSK-1 ENCFF845VHA 321 bp overlap

ChIP PFSK1 ENCSR000BOX.REST.PFSK1 162 bp overlap

Runx1 1 dataset

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

SMAD2 4 datasets

ChIP endoderm GSE29422.SMAD2.endoderm 220 bp overlap

ChIP hESC GSE29422.SMAD2.hESC 161 bp overlap

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 415 bp overlap

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 295 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 545 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 744 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 744 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 744 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 744 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 706 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 577 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 474 bp overlap

SMAD3 3 datasets

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 177 bp overlap

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 166 bp overlap

ChIP hESC GSE29422.SMAD3.hESC 157 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 189 bp overlap

SMARCA2 3 datasets

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 225 bp overlap

ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 412 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 240 bp overlap

SMARCA4 1 dataset

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 398 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 344 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 236 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 333 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap

TAL1::TCF3 1 dataset

Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap

ZNF274 1 dataset

Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap

ZNF75A 1 dataset

Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

Zic1::Zic2 2 datasets

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 2 datasets

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap

Znf423 1 dataset

Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap