chr1 : 64,450,715 64,451,728
1,013 bp 57 TFs 3 linked genes
This 1.0 kb open chromatin element is linked to CACHD1, RAVER2, and PGM1 and is bound by 57 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
CACHD1 18.8 kb Distal Multiome
RAVER2 293.7 kb Distal Multiome
PGM1 857.9 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:64,445,715 – 64,456,728
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BCL11A 10 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 53 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 53 bp overlap
ChIP CD34_Day7_15min GSE104676.BCL11A.CD34_Day7_15min 59 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 97 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 82 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 82 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 77 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 165 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 91 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 91 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 279 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 134 bp overlap
EN2 1 dataset
Motif DE_48h DE_48h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 500 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 854 bp overlap
ESX1 1 dataset
Motif DE_48h DE_48h-ESX1_MA0644.3 7 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 214 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 421 bp overlap
FOSL1 1 dataset
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 326 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 218 bp overlap
ChIP DE DE-FOXA2-1 559 bp overlap
ChIP DE DE-FOXA2-2 587 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 262 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 394 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 255 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 77 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 142 bp overlap
ChIP erythroblast ENCFF867JAR 370 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 392 bp overlap
GATA2 3 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 149 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 492 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 203 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 714 bp overlap
ChIP DE DE-GATA4-2 1013 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 576 bp overlap
ChIP foregut GSE117136.GATA4.foregut 541 bp overlap
GATA6 12 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 234 bp overlap
ChIP DE DE-GATA6-1 715 bp overlap
ChIP DE DE-GATA6-2 1013 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 714 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 938 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 607 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 963 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 975 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 698 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 889 bp overlap
ChIP foregut GSE117136.GATA6.foregut 381 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 254 bp overlap
GBX1 1 dataset
Motif DE_48h DE_48h-GBX1_MA0889.2 7 bp overlap
HNF1A 1 dataset
Motif DE_48h DE_48h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_48h DE_48h-HNF1B_MA0153.2 13 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 515 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
LBX1 1 dataset
Motif DE_48h DE_48h-LBX1_MA0618.2 7 bp overlap
LHX9 1 dataset
Motif DE_48h DE_48h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_48h DE_48h-LMX1A_MA0702.3 7 bp overlap
MECOM 1 dataset
ChIP K562 ENCFF773RGL 227 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 241 bp overlap
ChIP K562 ENCFF320GSD 185 bp overlap
MEOX1 1 dataset
Motif DE_48h DE_48h-MEOX1_MA0661.2 7 bp overlap
MITF 2 datasets
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 50 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 165 bp overlap
NOTO 1 dataset
Motif DE_48h DE_48h-NOTO_MA0710.2 7 bp overlap
NR2C1 1 dataset
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_48h DE_48h-NR2F1_MA0017.3 12 bp overlap
NR3C1 1 dataset
ChIP LCL_DEX GSE45638.NR3C1.LCL_DEX 94 bp overlap
Nr1H2 1 dataset
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 183 bp overlap
PRRX2 1 dataset
Motif DE_48h DE_48h-PRRX2_MA0075.4 7 bp overlap
RORA 1 dataset
Motif DE_48h DE_48h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
Motif DE_48h DE_48h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_48h DE_48h-RORC_MA1151.2 10 bp overlap
SMAD1 1 dataset
ChIP CD34_PROG_BMP GSE29194.SMAD1.CD34_PROG_BMP 140 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 555 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 421 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 284 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 484 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 516 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 102 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 452 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 962 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 227 bp overlap
STAT2 1 dataset
ChIP THP-1 GSE128111.STAT2.THP-1 161 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 416 bp overlap
TAL1 2 datasets
ChIP CD34 GSE52924.TAL1.CD34 207 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 204 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 569 bp overlap
VAX1 1 dataset
Motif DE_48h DE_48h-VAX1_MA0722.2 7 bp overlap
VSX1 1 dataset
Motif DE_48h DE_48h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_48h DE_48h-VSX2_MA0726.2 7 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap