chr3 : 136,190,868 136,191,253
385 bp 44 TFs 1 linked gene
This 385 bp open chromatin element is linked to MSL2 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MSL2 5.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:136,185,868 – 136,196,253
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 281 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 237 bp overlap
ARID3A 2 datasets
ChIP GM12878 ENCFF006WWZ 276 bp overlap
ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 246 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 325 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 231 bp overlap
CEBPB 1 dataset
ChIP K562 ENCFF584CTB 107 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF031ISE 51 bp overlap
ChIP BLaER1 ENCFF093OYK 59 bp overlap
ChIP BLaER1 ENCFF274GAT 74 bp overlap
ChIP BLaER1 ENCFF896HSY 112 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 385 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 284 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 154 bp overlap
EP300 1 dataset
ChIP GM12878 ENCFF039QRE 351 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 284 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 312 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 260 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 307 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 285 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 296 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 372 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 327 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 321 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 385 bp overlap
ChIP GM12878 ENCFF824TGK 235 bp overlap
IRF4 4 datasets
ChIP B-cell GSE142493.IRF4.B-cell 299 bp overlap
ChIP BC-3 GSE132777.IRF4.BC-3 320 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 157 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 211 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 281 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 361 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 271 bp overlap
KLF4 4 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 158 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 269 bp overlap
ChIP WIBR3 GSE130417.KLF4.WIBR3 191 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 247 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 385 bp overlap
MEN1 1 dataset
ChIP MCF-7 GSE85317.MEN1.MCF-7 241 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 123 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 286 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 353 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 298 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 134 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 385 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 300 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 272 bp overlap
ChIP hESC GSE18292.NANOG.hESC 134 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 348 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 359 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 129 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 233 bp overlap
POU3F2 1 dataset
ChIP hiPSC GSE149017.POU3F2.hiPSC 196 bp overlap
POU5F1 7 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 205 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 315 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 159 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 163 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 189 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 332 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 301 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 52 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 176 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 261 bp overlap
SKIL 3 datasets
ChIP GM12878 ENCFF171OVM 385 bp overlap
ChIP GM12878 ENCFF171OVM 276 bp overlap
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 369 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 319 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 304 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 300 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 385 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 216 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 321 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 382 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 165 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 280 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 267 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 159 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 335 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 164 bp overlap