chr3 : 104,450,581 – 104,451,052

471 bp 80 TFs 0 linked genes

This 471 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

80 transcription factors

AR 1 dataset

ChIP MCF-7 ERP001226.AR.MCF-7 126 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap

ATF4 3 datasets

Motif DE_48h DE_48h-ATF4_MA0833.3 10 bp overlap

Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap

Motif DE_72h DE_72h-ATF4_MA0833.3 10 bp overlap

Bcl11B 1 dataset

Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap

DMRTA2 2 datasets

Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap

Motif DE_72h DE_72h-DMRTA2_MA1478.2 6 bp overlap

DPRX 3 datasets

Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap

Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap

Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap

Dux 3 datasets

Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap

Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap

Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap

EBF3 1 dataset

Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap

ERF::FOXO1 2 datasets

Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap

Motif DE_72h DE_72h-ERFFOXO1_MA1936.2 12 bp overlap

ESR1 13 datasets

Motif DE_60h DE_60h-ESR1_MA0112.4 15 bp overlap

ChIP MCF-7 GSE41561.ESR1.MCF-7 126 bp overlap

ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 114 bp overlap

ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 212 bp overlap

ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 425 bp overlap

ChIP T-47D_CR3flp GSE99479.ESR1.T-47D_CR3flp 209 bp overlap

ChIP T-47D_siCont-Veh GSE126004.ESR1.T-47D_siCont-Veh 177 bp overlap

ChIP T-47D_siFOXA1-Veh GSE126004.ESR1.T-47D_siFOXA1-Veh 174 bp overlap

ChIP ZR751 ERP000783.ESR1.ZR751 324 bp overlap

ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 381 bp overlap

ChIP breast-cancer_S176 GSE128018.ESR1.breast-cancer_S176 352 bp overlap

ChIP breast-cancer_S186 GSE128018.ESR1.breast-cancer_S186 210 bp overlap

ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 404 bp overlap

ESR1_Y537C 1 dataset

ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 405 bp overlap

ESRRA 1 dataset

Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap

ESRRB 1 dataset

Motif DE_60h DE_60h-ESRRB_MA0141.4 10 bp overlap

ETV5::FIGLA 2 datasets

Motif DE_60h DE_60h-ETV5FIGLA_MA1945.2 14 bp overlap

Motif DE_72h DE_72h-ETV5FIGLA_MA1945.2 14 bp overlap

ETV5::FOXO1 2 datasets

Motif DE_60h DE_60h-ETV5FOXO1_MA1947.2 10 bp overlap

Motif DE_72h DE_72h-ETV5FOXO1_MA1947.2 10 bp overlap

Ebf2 1 dataset

Motif DE_60h DE_60h-Ebf2_MA1604.2 9 bp overlap

Esrrg 1 dataset

Motif DE_60h DE_60h-Esrrg_MA0643.2 9 bp overlap

FIGLA 1 dataset

Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap

FOXA1 5 datasets

ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 313 bp overlap

ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 214 bp overlap

ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 242 bp overlap

ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 383 bp overlap

ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 227 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 450 bp overlap

ChIP DE DE-FOXA2-2 433 bp overlap

FOXB1 2 datasets

Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap

Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap

FOXC1 2 datasets

Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap

Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap

FOXC2 2 datasets

Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap

Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap

FOXD2 2 datasets

Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap

Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap

FOXE1 2 datasets

Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap

Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap

FOXO1::ELF1 2 datasets

Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap

Motif DE_72h DE_72h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO6 2 datasets

Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap

Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap

GATA1::TAL1 3 datasets

Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap

Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap

Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 381 bp overlap

ChIP DE DE-GATA4-2 456 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 339 bp overlap

ChIP DE DE-GATA6-2 421 bp overlap

GRHL2 2 datasets

Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap

Motif DE_72h DE_72h-GRHL2_MA1105.3 8 bp overlap

HIC2 2 datasets

Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap

Hnf1A 1 dataset

Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap

NFIC 1 dataset

Motif DE_60h DE_60h-NFIC_MA1527.2 15 bp overlap

NFIC::TLX1 1 dataset

Motif DE_60h DE_60h-NFICTLX1_MA0119.1 14 bp overlap

NKX2-2 3 datasets

Motif DE_48h DE_48h-NKX2-2_MA1645.2 8 bp overlap

Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap

Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap

NR1H2::RXRA 1 dataset

Motif DE_60h DE_60h-NR1H2RXRA_MA0115.1 17 bp overlap

NR2C1 1 dataset

Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap

NR2F1 1 dataset

Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap

NR2F2 1 dataset

Motif DE_60h DE_60h-NR2F2_MA1111.2 7 bp overlap

NR4A2 1 dataset

Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap

NR5A1 1 dataset

Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap

NR6A1 1 dataset

Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap

Nr1H2 1 dataset

Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap

Nr2F6 1 dataset

Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap

Nr2e1 2 datasets

Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap

Motif DE_72h DE_72h-Nr2e1_MA0676.1 9 bp overlap

Nr5A2 1 dataset

Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap

Ppara 1 dataset

Motif DE_60h DE_60h-Ppara_MA2338.1 7 bp overlap

RBPJ 1 dataset

Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap

RORA 1 dataset

Motif DE_60h DE_60h-RORA_MA0071.1 10 bp overlap

RORB 1 dataset

Motif DE_60h DE_60h-RORB_MA1150.2 10 bp overlap

Rarb 1 dataset

Motif DE_60h DE_60h-Rarb_MA0857.1 16 bp overlap

Rarg 1 dataset

Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap

SCRT2 2 datasets

Motif DE_60h DE_60h-SCRT2_MA0744.3 10 bp overlap

Motif DE_72h DE_72h-SCRT2_MA0744.3 10 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 244 bp overlap

SOX10 1 dataset

Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 215 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 291 bp overlap

SOX4 1 dataset

Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap

SREBF1 3 datasets

Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap

Motif DE_60h DE_60h-SREBF1_MA0595.1 10 bp overlap

Motif DE_72h DE_72h-SREBF1_MA0595.1 10 bp overlap

SREBF2 3 datasets

Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap

Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap

Motif DE_72h DE_72h-SREBF2_MA0596.1 10 bp overlap

STAT1::STAT2 1 dataset

Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap

Sox11 1 dataset

Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap

Sox17 1 dataset

Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap

Sox5 1 dataset

Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap

Sox7 1 dataset

Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap

TCF7L2 1 dataset

Motif DE_60h DE_60h-TCF7L2_MA0523.2 9 bp overlap

TFAP2A 1 dataset

Motif DE_60h DE_60h-TFAP2A_MA0810.2 11 bp overlap

TFAP2B 1 dataset

Motif DE_60h DE_60h-TFAP2B_MA0811.2 11 bp overlap

TFAP2C 1 dataset

Motif DE_60h DE_60h-TFAP2C_MA0524.3 11 bp overlap

ZEB1 1 dataset

Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap

ZNF382 3 datasets

Motif DE_48h DE_48h-ZNF382_MA1594.1 24 bp overlap

Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap

Motif DE_72h DE_72h-ZNF382_MA1594.1 24 bp overlap

ZNF416 3 datasets

Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap

Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap

Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap

ZNF549 2 datasets

Motif DE_60h DE_60h-ZNF549_MA1728.2 8 bp overlap

Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap

ZNF684 1 dataset

Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap

Zic1::Zic2 2 datasets

Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap

Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap

Zic3 2 datasets

Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap

Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap