chr3 : 84,956,687 – 84,957,979

1,292 bp 60 TFs 1 linked gene

This 1.3 kb open chromatin element is linked to CADM2 and is bound by 60 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
CADM2		1.0 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

60 transcription factors

AR 1 dataset

ChIP LNCaP GSE117430.AR.LNCaP 190 bp overlap

Ahr::Arnt 1 dataset

Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap

Arid5a 1 dataset

Motif DE_60h DE_60h-Arid5a_MA0602.2 8 bp overlap

Atf3 1 dataset

Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap

BACH1 1 dataset

Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap

BARX2 1 dataset

Motif DE_60h DE_60h-BARX2_MA1471.2 9 bp overlap

BATF 1 dataset

Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap

BATF3 1 dataset

Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap

BATF::JUN 1 dataset

Motif DE_60h DE_60h-BATFJUN_MA0462.3 7 bp overlap

BNC2 1 dataset

Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap

CUX2 1 dataset

Motif DE_60h DE_60h-CUX2_MA0755.2 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 283 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap

FOS 1 dataset

Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap

FOSL1 1 dataset

Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap

FOXA1 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 194 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 1170 bp overlap

ChIP DE DE-FOXA2-2 1122 bp overlap

FOXB1 1 dataset

Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap

FOXC1 2 datasets

Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap

FOXC2 1 dataset

Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap

FOXD3 1 dataset

Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 963 bp overlap

ChIP DE DE-GATA4-2 1252 bp overlap

ChIP foregut GSE117136.GATA4.foregut 454 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 1054 bp overlap

ChIP DE DE-GATA6-2 1169 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 308 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 595 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 394 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 862 bp overlap

ChIP foregut GSE117136.GATA6.foregut 434 bp overlap

HNF1A 1 dataset

Motif DE_60h DE_60h-HNF1A_MA0046.3 13 bp overlap

HOXA4 1 dataset

Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap

HOXB4 1 dataset

Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap

Hnf1A 1 dataset

Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap

Hoxd13 1 dataset

Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap

Jun 1 dataset

Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap

MYC 1 dataset

ChIP P493-6 GSE77061.MYC.P493-6 136 bp overlap

NANOG 1 dataset

ChIP hESC GSE18292.NANOG.hESC 81 bp overlap

Nr2F6 1 dataset

Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap

ONECUT1 3 datasets

Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap

ChIP H9 ERP004206.ONECUT1.H9 247 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 419 bp overlap

ONECUT2 1 dataset

Motif DE_60h DE_60h-ONECUT2_MA0756.3 8 bp overlap

ONECUT3 1 dataset

Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap

PAX6 1 dataset

Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap

PHOX2B 1 dataset

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 97 bp overlap

POU6F1 1 dataset

Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap

PPARG 2 datasets

Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap

Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap

RARA 1 dataset

Motif DE_60h DE_60h-RARA_MA0729.1 18 bp overlap

RELA 2 datasets

Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap

Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap

Rarb 1 dataset

Motif DE_60h DE_60h-Rarb_MA0857.1 16 bp overlap

Rarg 1 dataset

Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap

SCRT1 1 dataset

Motif DE_60h DE_60h-SCRT1_MA0743.3 10 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 808 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 414 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 642 bp overlap

SOX15 1 dataset

Motif DE_60h DE_60h-SOX15_MA1152.2 7 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 541 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 566 bp overlap

VENTX 1 dataset

Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap

ZFP69B 1 dataset

ChIP HEK293T GSE78099.ZFP69B.HEK293T 153 bp overlap

ZKSCAN1 2 datasets

Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap

Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap

ZNF257 1 dataset

Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap

ZNF35 1 dataset

Motif DE_60h DE_60h-ZNF35_MA2333.1 7 bp overlap

ZNF382 1 dataset

Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap

ZNF534 1 dataset

ChIP HEK293T GSE78099.ZNF534.HEK293T 153 bp overlap

ZNF701 1 dataset

Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap

Zic2 2 datasets

Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap

Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap