chr3 : 79,012,908 79,013,246
338 bp 43 TFs 1 linked gene
This 338 bp open chromatin element is linked to ROBO1 and is bound by 43 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ROBO1 5.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:79,007,908 – 79,018,246
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 329 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 148 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 216 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 170 bp overlap
CTCF 2 datasets
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 238 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 81 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 296 bp overlap
FEZF1 3 datasets
ChIP HEK293 GSE76494.FEZF1.HEK293 78 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 220 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 177 bp overlap
FOXM1 1 dataset
ChIP MDA-MB-231_THIOS GSE40762.FOXM1.MDA-MB-231_THIOS 89 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 55 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 338 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 338 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 326 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 165 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 167 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 338 bp overlap
KMT2A 2 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 85 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 180 bp overlap
LEF1 1 dataset
ChIP HEK293T ENCFF869LPS 203 bp overlap
MAX 2 datasets
ChIP SK-N-SH ENCFF285LXR 141 bp overlap
ChIP melanocyte GSE115845.MAX.melanocyte 56 bp overlap
MITF 1 dataset
ChIP 501-mel GSE61965.MITF.501-mel 89 bp overlap
MYC 2 datasets
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 223 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 139 bp overlap
MYCN 3 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 62 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 79 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 338 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 338 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 332 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 338 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 64 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 238 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 330 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 234 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 121 bp overlap
POLR2A 1 dataset
ChIP PFSK-1 ENCFF576NIT 323 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 251 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 166 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF554DMZ 338 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 83 bp overlap
SIN3A 3 datasets
ChIP PFSK-1 ENCFF218MAY 216 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 177 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 51 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 87 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 258 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 211 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 176 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 227 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 275 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 69 bp overlap
TCF7L2 5 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 195 bp overlap
ChIP HEK293 ENCFF513JQN 338 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 279 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 207 bp overlap
ChIP hepatocellular-carcinoma-cell_420 GSE138781.TCF7L2.hepatocellular-carcinoma-cell_420 78 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 265 bp overlap
YY1 3 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 270 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 338 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 216 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 231 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 338 bp overlap
ZNF44 1 dataset
ChIP Hep-G2 ENCSR914HPP.ZNF44.Hep-G2 135 bp overlap