chr3 : 53,051,973 53,052,307
334 bp 35 TFs 2 linked genes
This 334 bp open chromatin element is linked to ENSG00000280417 and SFMBT1 and is bound by 35 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000280417 5.8 kb Proximal Proximity
SFMBT1 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:53,046,973 – 53,057,307
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 128 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 119 bp overlap
BRD4 2 datasets
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 238 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 155 bp overlap
CTCF 21 datasets
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP HepG2 ENCFF757EKU 321 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 164 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 177 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 184 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 290 bp overlap
ChIP body of pancreas ENCFF438KTE 334 bp overlap
ChIP body of pancreas ENCFF798MEO 98 bp overlap
ChIP body of pancreas ENCFF881RGF 281 bp overlap
ChIP islet ERP004003.CTCF.islet 161 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 110 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 145 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 179 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 189 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 236 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 205 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 75 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 334 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 242 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 205 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 180 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 223 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 273 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 246 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 71 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 300 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 127 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 259 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 205 bp overlap
ChIP DE DE-GATA6-2 334 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 151 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCFF064TDQ 334 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 296 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 159 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 159 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 139 bp overlap
RAD21 3 datasets
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 166 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 129 bp overlap
RFX5 3 datasets
ChIP Hep-G2 ENCSR000EEA.RFX5.Hep-G2 161 bp overlap
ChIP MCF-7 ENCFF983ILY 284 bp overlap
ChIP MCF-7 ENCSR924TVL.RFX5.MCF-7 334 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 334 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 287 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 334 bp overlap
SREBF1 2 datasets
ChIP MCF-7 ENCFF254QOR 234 bp overlap
ChIP MCF-7 ENCSR197DJH.SREBF1.MCF-7 249 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 127 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
YY1 2 datasets
ChIP Ishikawa ENCFF505XQX 334 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 176 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 283 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 115 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 144 bp overlap
ZNF143 3 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 220 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 206 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 160 bp overlap