chr3 : 39,965,575 39,966,160
585 bp 80 TFs 0 linked genes
This 585 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:39,960,575 – 39,971,160
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
Atf3 1 dataset
Motif DE_72h DE_72h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_72h DE_72h-BACH1_MA1633.2 9 bp overlap
BACH2 2 datasets
Motif DE_72h DE_72h-BACH2_MA1101.3 11 bp overlap
Motif DE_72h DE_72h-BACH2_MA1470.2 19 bp overlap
BATF 1 dataset
Motif DE_72h DE_72h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_72h DE_72h-BATF3_MA0835.3 7 bp overlap
BCL11A 1 dataset
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 56 bp overlap
BNC2 1 dataset
Motif DE_72h DE_72h-BNC2_MA1928.2 7 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 285 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 311 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 367 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 294 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 290 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 352 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 178 bp overlap
ChIP BLaER1 ENCFF346MCV 187 bp overlap
Crx 2 datasets
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dmbx1 1 dataset
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 259 bp overlap
ERG 1 dataset
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 109 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOS 1 dataset
Motif DE_72h DE_72h-FOS_MA0476.2 8 bp overlap
FOSL1 1 dataset
Motif DE_72h DE_72h-FOSL1_MA0477.3 9 bp overlap
FOSL2 1 dataset
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 491 bp overlap
ChIP DE DE-FOXA2-2 509 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 93 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 585 bp overlap
ChIP DE DE-GATA4-2 585 bp overlap
ChIP foregut GSE117136.GATA4.foregut 326 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 301 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 580 bp overlap
ChIP DE DE-GATA6-2 585 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 398 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 584 bp overlap
GSC 2 datasets
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
JDP2 1 dataset
Motif DE_72h DE_72h-JDP2_MA0655.1 9 bp overlap
JUNB 1 dataset
Motif DE_72h DE_72h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_72h DE_72h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_72h DE_72h-Jun_MA0489.3 8 bp overlap
MAFK 1 dataset
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 274 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 264 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 344 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 332 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 360 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 168 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 314 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 258 bp overlap
NFE2 1 dataset
Motif DE_72h DE_72h-NFE2_MA0841.2 10 bp overlap
NR1I3 1 dataset
Motif DE_72h DE_72h-NR1I3_MA1534.2 8 bp overlap
NR2C1 1 dataset
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR4A1 1 dataset
Motif DE_72h DE_72h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_72h DE_72h-NR4A2_MA0160.3 8 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 361 bp overlap
Nr1H2 1 dataset
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
OTX1 2 datasets
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 325 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 178 bp overlap
PAX6 1 dataset
Motif DE_72h DE_72h-PAX6_MA0069.1 14 bp overlap
PITX1 2 datasets
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 177 bp overlap
RARA 1 dataset
Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap
RHOXF1 2 datasets
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 282 bp overlap
Rarb 1 dataset
Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 329 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_72h DE_72h-SREBF2_MA0596.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
ZKSCAN3 1 dataset
Motif DE_72h DE_72h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF324 1 dataset
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap