chr3 : 30,082,745 – 30,082,993

248 bp 56 TFs 0 linked genes

This 248 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

56 transcription factors

ARID4B 1 dataset

ChIP HepG2 ENCFF519OXJ 68 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 248 bp overlap

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 229 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 248 bp overlap

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 166 bp overlap

CREB1 1 dataset

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 115 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 248 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 183 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 198 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

EZH2 5 datasets

ChIP H1 ENCFF232NZA 248 bp overlap

ChIP H1 ENCFF232NZA 75 bp overlap

ChIP WA01 ENCSR000ASY.EZH2.WA01 80 bp overlap

ChIP neural progenitor cell ENCFF472NFV 248 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 248 bp overlap

FOXA1 1 dataset

ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 110 bp overlap

GRHL2 1 dataset

Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 146 bp overlap

HMBOX1 2 datasets

Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap

Motif ES_0h ES_0h-HMBOX1_MA0895.2 7 bp overlap

JARID2 2 datasets

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 241 bp overlap

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 236 bp overlap

JUND 1 dataset

ChIP WA01 ENCSR000BKP.JUND.WA01 134 bp overlap

MAX 1 dataset

ChIP H1 ENCFF914VQY 248 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 248 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 190 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 175 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 248 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 248 bp overlap

ChIP hESC GSE18292.NANOG.hESC 109 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 197 bp overlap

Nfat5 1 dataset

Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 248 bp overlap

POLR2A 2 datasets

ChIP GM23338 ENCFF450WCS 248 bp overlap

ChIP H1 ENCFF833NJP 248 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 3 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 145 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 185 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 248 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RNF2 4 datasets

ChIP HUES-64 GSE104059.RNF2.HUES-64 226 bp overlap

ChIP WA01 GSE104690.RNF2.WA01 248 bp overlap

ChIP WA09 GSE105028.RNF2.WA09 248 bp overlap

ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 248 bp overlap

RYBP 1 dataset

ChIP WA01 GSE104690.RYBP.WA01 190 bp overlap

SCRT2 1 dataset

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

SIX1 1 dataset

Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap

SIX2 1 dataset

Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 201 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 193 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 234 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 216 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 223 bp overlap

Six4 1 dataset

Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap

TBP 3 datasets

ChIP hESC_10h GSE122298.TBP.hESC_10h 133 bp overlap

ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 243 bp overlap

ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 197 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 240 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 214 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 223 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 137 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 248 bp overlap

Tfcp2l1 1 dataset

Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap

USF1 1 dataset

ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap

ZFP57 1 dataset

ChIP hESC GSE115387.ZFP57.hESC 132 bp overlap

ZNF143 1 dataset

ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 237 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 194 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 248 bp overlap

ZNF528 1 dataset

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

ZNF549 1 dataset

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

ZNF707 2 datasets

Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap

Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap

ZNF76 1 dataset

Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 2 datasets

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 2 datasets

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap