chr3 : 29,870,156 29,870,721
565 bp 41 TFs 0 linked genes
This 565 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:29,865,156 – 29,875,721
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 137 bp overlap
CTCF 2 datasets
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 63 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 189 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 341 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 140 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 499 bp overlap
ChIP DE DE-FOXA2-2 473 bp overlap
GATA1 5 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 172 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 226 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 262 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 204 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 495 bp overlap
ChIP DE DE-GATA4-2 565 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 309 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 72 bp overlap
ChIP foregut GSE117136.GATA4.foregut 398 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 415 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 322 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 493 bp overlap
ChIP DE DE-GATA6-2 459 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 534 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 502 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 565 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 565 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 565 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 392 bp overlap
ChIP foregut GSE117136.GATA6.foregut 434 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 414 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 436 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 322 bp overlap
HOXB4 1 dataset
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
JDP2 1 dataset
Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 309 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 334 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 360 bp overlap
KLF17 1 dataset
Motif DE_60h DE_60h-KLF17_MA1514.2 14 bp overlap
MYB 1 dataset
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
NFE2 1 dataset
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
NFYB 1 dataset
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
NKX6-3 2 datasets
Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap
NRL 1 dataset
Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 305 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 257 bp overlap
PAX6 1 dataset
Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap
POU6F1 1 dataset
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
Plagl1 1 dataset
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
RREB1 1 dataset
Motif DE_60h DE_60h-RREB1_MA0073.2 19 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 385 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 510 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 394 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 494 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 324 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 430 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 402 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 542 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 389 bp overlap
SPI1 1 dataset
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 167 bp overlap
SREBF1 1 dataset
Motif DE_60h DE_60h-SREBF1_MA0829.3 10 bp overlap
TAL1 1 dataset
ChIP ProEs GSE59087.TAL1.ProEs 325 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 453 bp overlap
ZNF184 1 dataset
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF317 1 dataset
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF382 1 dataset
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 290 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap