chr1 : 48,710,269 48,710,755
486 bp 42 TFs 1 linked gene
This 486 bp open chromatin element is linked to SPATA6 and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SPATA6 238.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:48,705,269 – 48,715,755
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ASH2L 4 datasets
ChIP H1 ENCFF399KAM 486 bp overlap
ChIP H1 ENCFF399KAM 152 bp overlap
ChIP H1 ENCFF399KAM 362 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 486 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 442 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 242 bp overlap
BCL11A 2 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 134 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 171 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 349 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 164 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 292 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 211 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 486 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
GRHL2 2 datasets
ChIP HBE GSE46194.GRHL2.HBE 203 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 167 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HNF4A 2 datasets
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
Motif ES_0h ES_0h-HNF4A_MA1494.2 14 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 319 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
NANOG 4 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 452 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 238 bp overlap
ChIP hESC GSE18292.NANOG.hESC 152 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 486 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 348 bp overlap
Prdm15 1 dataset
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 486 bp overlap
SNAI2 1 dataset
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 4 datasets
ChIP H9 GSE46837.SOX2.H9 277 bp overlap
ChIP hESC GSE69479.SOX2.hESC 213 bp overlap
ChIP hESC GSE18292.SOX2.hESC 151 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 247 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 319 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 321 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 382 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 196 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 154 bp overlap
TEAD1 1 dataset
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TP73 1 dataset
Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 183 bp overlap
USF1 4 datasets
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 66 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 261 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
USF2 2 datasets
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP WTC11 ENCFF139JAW 417 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 297 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap