chr2 : 200,869,001 200,869,309
308 bp 40 TFs 1 linked gene
This 308 bp open chromatin element is linked to CLK1 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CLK1 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:200,864,001 – 200,874,309
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 53 bp overlap
ChIP K562 ENCFF343XWA 108 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 139 bp overlap
BRD4 10 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 115 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 178 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 282 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 103 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 76 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 277 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 104 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 308 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD4.THP-1_DMSO-PMA 157 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 308 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 118 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF739JDE 62 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 78 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 308 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 68 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 51 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 308 bp overlap
ChIP DE DE-FOXA2-2 308 bp overlap
GABPA 2 datasets
ChIP K-562 ENCSR290MUH.GABPA.K-562 122 bp overlap
ChIP K562 ENCFF139LXS 308 bp overlap
GABPB1 3 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 110 bp overlap
ChIP K562 ENCFF015GDS 76 bp overlap
ChIP K562 ENCFF885NMS 138 bp overlap
GATA1 2 datasets
ChIP erythroblast ENCFF867JAR 308 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 308 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 308 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 308 bp overlap
ChIP DE DE-GATA4-2 308 bp overlap
ChIP foregut GSE117136.GATA4.foregut 246 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 308 bp overlap
ChIP DE DE-GATA6-2 308 bp overlap
ChIP foregut GSE117136.GATA6.foregut 253 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 308 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 308 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 308 bp overlap
ChIP K562 ENCFF055GAZ 308 bp overlap
ChIP K562 ENCFF317JJX 308 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 234 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 241 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 308 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 303 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 84 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 232 bp overlap
RUNX1 1 dataset
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 198 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 308 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 293 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 212 bp overlap
SMARCA4 7 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 208 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 308 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 308 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 308 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 107 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 151 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 180 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 308 bp overlap
ChIP K562 ENCFF690CFF 151 bp overlap
SPI1 3 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 119 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 86 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 59 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 308 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 228 bp overlap
ZBTB40 2 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 84 bp overlap
ChIP K562 ENCFF337GJB 212 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 116 bp overlap
ZEB2 3 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 308 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 263 bp overlap
ChIP K562 ENCFF795CMH 308 bp overlap
ZNF384 2 datasets
ChIP K-562 ENCSR000EFP.ZNF384.K-562 104 bp overlap
ChIP K562 ENCFF365NXQ 54 bp overlap