chr2 : 183,409,734 – 183,410,152

418 bp 52 TFs 0 linked genes

This 418 bp open chromatin element has no linked target genes and is bound by 52 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

52 transcription factors

CHD7 3 datasets

ChIP H1 ENCFF126NLU 327 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 66 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 193 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

GATA6 5 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 355 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 397 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 269 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 395 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap

HSF2 1 dataset

Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap

Hmx2 1 dataset

Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

IRF3 1 dataset

Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

Isl1 1 dataset

Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap

JUN 7 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 334 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 347 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 295 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 402 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 280 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 305 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 315 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

NANOG 8 datasets

ChIP GM23338 ENCFF065NZG 297 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 164 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 418 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 418 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 160 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 418 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 418 bp overlap

ChIP hESC GSE18292.NANOG.hESC 246 bp overlap

NFIL3 1 dataset

Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap

NIPBL 1 dataset

ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 280 bp overlap

PHOX2A 2 datasets

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU5F1 7 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP GM23338 ENCFF333SNB 301 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 351 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 267 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 274 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 379 bp overlap

PROP1 1 dataset

Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 378 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 351 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 352 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 336 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 357 bp overlap

SMARCA4 3 datasets

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 251 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 309 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 350 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 214 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 418 bp overlap

SMARCC1 3 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 252 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 410 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 393 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 95 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 243 bp overlap

SP1 1 dataset

ChIP H1 ENCFF263FUH 289 bp overlap

STAT1 1 dataset

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap

Stat6 2 datasets

Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 65 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 2 datasets

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

ChIP hepatocellular-carcinoma-cell_420 GSE138781.TCF7L2.hepatocellular-carcinoma-cell_420 70 bp overlap

TEAD1 1 dataset

Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap

TEAD2 1 dataset

Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap

TEAD3 1 dataset

Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap

TEAD4 3 datasets

Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap

ChIP ESC S26-ESC-d0-TEAD4-exp1 347 bp overlap

ChIP H1 ENCFF778PAX 245 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 219 bp overlap

ZNF24 1 dataset

Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 227 bp overlap

ZNF528 1 dataset

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap