chr2 : 135,110,158 135,110,677
519 bp 68 TFs 3 linked genes
This 519 bp open chromatin element is linked to RAB3GAP1, CCNT2, and CCNT2-AS1 and is bound by 68 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
RAB3GAP1 58.2 kb Distal Multiome
CCNT2 191.7 kb Distal Multiome
CCNT2-AS1 191.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:135,105,158 – 135,115,677
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
CUX1 2 datasets
Motif DE_60h DE_60h-CUX1_MA0754.3 9 bp overlap
Motif DE_72h DE_72h-CUX1_MA0754.3 9 bp overlap
CUX2 2 datasets
Motif DE_60h DE_60h-CUX2_MA0755.2 9 bp overlap
Motif DE_72h DE_72h-CUX2_MA0755.2 9 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 185 bp overlap
EOMES 2 datasets
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 281 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOSL2 1 dataset
Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 478 bp overlap
ChIP DE DE-FOXA2-2 437 bp overlap
FOXD2 1 dataset
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_72h DE_72h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 486 bp overlap
ChIP DE DE-GATA4-2 519 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 195 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 259 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 483 bp overlap
ChIP DE DE-GATA6-2 519 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 465 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 380 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 330 bp overlap
HNF1A 1 dataset
Motif DE_72h DE_72h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_72h DE_72h-HNF1B_MA0153.2 13 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 134 bp overlap
MEF2D 2 datasets
Motif DE_60h DE_60h-MEF2D_MA0773.1 12 bp overlap
Motif DE_72h DE_72h-MEF2D_MA0773.1 12 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 102 bp overlap
NFIA 2 datasets
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
NFIC 2 datasets
Motif DE_48h DE_48h-NFIC_MA0161.3 7 bp overlap
Motif DE_72h DE_72h-NFIC_MA0161.3 7 bp overlap
NFIX 2 datasets
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
NR5A1 1 dataset
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NR6A1 1 dataset
Motif DE_72h DE_72h-NR6A1_MA1541.2 14 bp overlap
Nkx2-1 1 dataset
Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap
Nr2F6 1 dataset
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
PKNOX2 1 dataset
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 144 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 163 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 519 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 372 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 469 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 153 bp overlap
SNAI2 1 dataset
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 385 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 442 bp overlap
TBR1 1 dataset
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TFAP2A 1 dataset
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
TGIF1 1 dataset
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
Tbx6 1 dataset
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
VEZF1 2 datasets
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
Vdr 1 dataset
Motif DE_72h DE_72h-Vdr_MA0693.4 7 bp overlap
ZBTB18 1 dataset
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZBTB6 1 dataset
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP42 2 datasets
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZNF135 1 dataset
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF257 2 datasets
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF282 1 dataset
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF416 2 datasets
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF460 2 datasets
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF530 2 datasets
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF558 1 dataset
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF675 1 dataset
Motif DE_72h DE_72h-ZNF675_MA1714.2 19 bp overlap
ZNF701 2 datasets
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap