chr2 : 98,348,401 – 98,348,629
228 bp 41 TFs 2 linked genes
This 228 bp open chromatin element is linked to ENSG00000227987 and CNGA3 and is bound by 41 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000227987 1.4 kb Proximal Proximity
CNGA3 1.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:98,343,401 – 98,353,629
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 197 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 228 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 228 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 228 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 156 bp overlap
BMI1 2 datasets
ChIP GM12878 ENCSR469WII.BMI1.GM12878 194 bp overlap
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 228 bp overlap
BRD4 8 datasets
ChIP K-562_dilution-6-100 GSE140325.BRD4.K-562_dilution-6-100 64 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 228 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 228 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 228 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 124 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 113 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 228 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 182 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 198 bp overlap
COMMD3-BMI1,BMI1 2 datasets
ChIP GM12878 ENCFF249AMT 228 bp overlap
ChIP MCF-7 ENCFF570JPP 138 bp overlap
CTCF 12 datasets
ChIP H1 ENCFF414GZI 111 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 156 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 226 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 228 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 182 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 228 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 125 bp overlap
ChIP islet ERP004003.CTCF.islet 176 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 228 bp overlap
ChIP neural cell ENCFF335ADI 212 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 209 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 214 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 147 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 228 bp overlap
ChIP neural cell ENCFF442QNK 221 bp overlap
ESR1 3 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 145 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 128 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 94 bp overlap
EZH2 4 datasets
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 217 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 212 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 188 bp overlap
ChIP keratinocyte ENCFF070STK 97 bp overlap
FOXA1 5 datasets
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 147 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 168 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 96 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 118 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 110 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 228 bp overlap
ChIP DE DE-FOXA2-2 228 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 216 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF353UJQ 228 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 163 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 148 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 63 bp overlap
MAX 2 datasets
ChIP H1 ENCFF601FOM 65 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 149 bp overlap
MXI1 4 datasets
ChIP H1 ENCFF963FZS 212 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 124 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 228 bp overlap
ChIP neural cell ENCFF623HQN 139 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 181 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 128 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 159 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 159 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 192 bp overlap
ChIP islet ERP001456.PDX1.islet 138 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 121 bp overlap
ChIP neural cell ENCFF604SPB 228 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 150 bp overlap
ChIP neural cell ENCFF564MOT 185 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 228 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 179 bp overlap
ChIP neural cell ENCFF882LXX 89 bp overlap
RFX1 10 datasets
ChIP Hep-G2 ENCSR928API.RFX1.Hep-G2 228 bp overlap
ChIP HepG2 ENCFF144SCF 149 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 228 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 228 bp overlap
ChIP K562 ENCFF421AVO 228 bp overlap
ChIP K562 ENCFF809XVG 228 bp overlap
ChIP MCF-7 ENCFF782EZS 228 bp overlap
ChIP MCF-7 ENCFF973QAD 222 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 228 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 228 bp overlap
RFX3 2 datasets
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 119 bp overlap
ChIP HepG2 ENCFF681ZHO 178 bp overlap
RUNX1 1 dataset
ChIP SKH1 GSE87283.RUNX1.SKH1 140 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 53 bp overlap
SIN3A 2 datasets
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 123 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 98 bp overlap
SMARCA4 1 dataset
ChIP NSC GSE125033.SMARCA4.NSC 198 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 228 bp overlap
ChIP neural cell ENCFF795YGY 136 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 182 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 72 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 109 bp overlap
SUZ12 2 datasets
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 107 bp overlap
ChIP NT2/D1 ENCFF574SXS 228 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 156 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 201 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 228 bp overlap
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