chr2 : 76,985,310 76,985,712
402 bp 48 TFs 1 linked gene
This 402 bp open chromatin element is linked to LRRTM4-AS1 and is bound by 48 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LRRTM4-AS1 251 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:76,980,310 – 76,990,712
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 151 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 259 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 149 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 261 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 402 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 151 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 167 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 218 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 345 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 367 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 344 bp overlap
ERG 2 datasets
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 99 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 146 bp overlap
FLI1 3 datasets
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 214 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 235 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 281 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 200 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 126 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 222 bp overlap
FOSL2 1 dataset
ChIP hESC GSE69539.FOSL2.hESC 145 bp overlap
FOXA1 6 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 402 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 288 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 402 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 384 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 388 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 402 bp overlap
FOXA2 6 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 351 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 402 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 318 bp overlap
ChIP DE DE-FOXA2-1 402 bp overlap
ChIP DE DE-FOXA2-2 402 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 222 bp overlap
GATA2 7 datasets
ChIP ESF GSE108408.GATA2.ESF 240 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 156 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 328 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 231 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 165 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 246 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 68 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 392 bp overlap
ChIP DE DE-GATA4-2 402 bp overlap
ChIP foregut GSE117136.GATA4.foregut 99 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 273 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 256 bp overlap
ChIP DE DE-GATA6-2 402 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 233 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 402 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 303 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 238 bp overlap
HNF4A 2 datasets
ChIP HCT-116_TCF4 GSE62890.HNF4A.HCT-116_TCF4 246 bp overlap
ChIP HCT-116_TCF4_DOX GSE62890.HNF4A.HCT-116_TCF4_DOX 245 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 243 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 266 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 251 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 220 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 104 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 173 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 305 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 240 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 184 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 281 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 189 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 402 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 235 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 239 bp overlap
POLR2A 2 datasets
ChIP PFSK-1 ENCFF576NIT 402 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 244 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 315 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 402 bp overlap
RELA 10 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 114 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 144 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 112 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 65 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 202 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 131 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 71 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 51 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 152 bp overlap
REST 2 datasets
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 295 bp overlap
SIN3A 2 datasets
ChIP PFSK-1 ENCFF218MAY 291 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 180 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 238 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 187 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 402 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 324 bp overlap
SMARCA4 5 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 402 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 176 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 363 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 374 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 402 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 340 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 402 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 193 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 402 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 285 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 1 dataset
ChIP PFSK-1 ENCFF982LZL 402 bp overlap
TCF7L2 3 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 355 bp overlap
ChIP HCT116 ENCFF038POZ 190 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 74 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 172 bp overlap