chr2 : 58,044,681 58,045,380
699 bp 46 TFs 2 linked genes
This 699 bp open chromatin element is linked to ENSG00000287875 and VRK2 and is bound by 46 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000287875 1.3 kb Proximal Proximity
VRK2 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:58,039,681 – 58,050,380
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 225 bp overlap
ChIP breast_tumor_Male_30 GSE104399.AR.breast_tumor_Male_30 51 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 91 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 668 bp overlap
BCL3 2 datasets
ChIP GM12878 ENCFF854PAY 351 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 159 bp overlap
BRD4 3 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 57 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 67 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 343 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 270 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 169 bp overlap
FOXA1 2 datasets
ChIP breast_tumor_Male_1 GSE104399.FOXA1.breast_tumor_Male_1 145 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 196 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 65 bp overlap
ChIP DE DE-FOXA2-1 347 bp overlap
ChIP DE DE-FOXA2-2 280 bp overlap
FOXK2 2 datasets
ChIP K-562 ENCSR302AWT.FOXK2.K-562 313 bp overlap
ChIP K-562 ENCSR508DQA.FOXK2.K-562 106 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 560 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-1 392 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 229 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 346 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 320 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 298 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF616FJX 418 bp overlap
ChIP GM12878 ENCFF616FJX 571 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 153 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 473 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 219 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 151 bp overlap
MIER1 1 dataset
ChIP K-562 ENCSR426MDV.MIER1.K-562 247 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 136 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 223 bp overlap
MTA1 1 dataset
ChIP K-562 ENCSR807BGP.MTA1.K-562 308 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 289 bp overlap
NBN 3 datasets
ChIP GM12878 ENCSR278SQL.NBN.GM12878 266 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 309 bp overlap
ChIP K-562 ENCSR085QEV.NBN.K-562 285 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 198 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 300 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 178 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 204 bp overlap
PBX3 2 datasets
ChIP GM12878 ENCFF285BQQ 217 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 162 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 271 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 261 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 225 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 305 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 276 bp overlap
POLR2A 3 datasets
ChIP GM12892 ENCFF245LYF 545 bp overlap
ChIP GM12892 ENCFF245LYF 353 bp overlap
ChIP GM19099 ENCFF726IBN 452 bp overlap
SMYD3 1 dataset
ChIP HepG2 ENCFF612TNJ 495 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 244 bp overlap
SPI1 4 datasets
ChIP EM-3 GSE128834.SPI1.EM-3 129 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 89 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 84 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 121 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 210 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 415 bp overlap
ZFP91 1 dataset
ChIP K562 ENCFF501CDP 52 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap