Transcription factors with Perturb-seq knockdown data for ENSG00000287875. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ENSG00000287875 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ENSG00000287875, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:58,038,059–58,038,687 | 8.0 kb | Proximal (<10kb) | 13 | |
| chr2:58,040,625–58,040,829 | 5.9 kb | Proximal (<10kb) | 12 | |
| chr2:58,041,707–58,042,131 | 4.6 kb | Proximal (<10kb) | 13 | |
| chr2:58,044,681–58,045,380 | 1.3 kb | Proximal (<10kb) | 46 | |
| chr2:58,045,857–58,047,827 | at TSS | At TSS | 1094 |
Genomic view of the ENSG00000287875 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.