chr2 : 41,233,757 – 41,234,412

655 bp 50 TFs 0 linked genes

This 655 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

50 transcription factors

Bcl11B 1 dataset

Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 149 bp overlap

DPRX 2 datasets

Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap

Motif ES_0h ES_0h-DPRX_MA1480.2 9 bp overlap

Foxl2 2 datasets

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap

Foxq1 2 datasets

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap

GATA1 2 datasets

Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap

Motif ES_0h ES_0h-GATA1_MA0035.5 7 bp overlap

HIF1A 1 dataset

ChIP macrophage_HYPO GSE43109.HIF1A.macrophage_HYPO 78 bp overlap

IRF2 1 dataset

ChIP CD34_ADULT GSE70660.IRF2.CD34_ADULT 164 bp overlap

IRF3 1 dataset

Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap

IRF5 1 dataset

Motif DE_12h DE_12h-IRF5_MA1420.1 14 bp overlap

IRF9 1 dataset

Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap

MYC 1 dataset

ChIP GEN2-2 GSE70275.MYC.GEN2-2 197 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 623 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 239 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 286 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 159 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 191 bp overlap

ChIP hESC GSE18292.NANOG.hESC 170 bp overlap

NR1I3 2 datasets

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

Motif ES_0h ES_0h-NR1I3_MA1534.2 8 bp overlap

NR2C2 2 datasets

Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap

Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap

NR2F1 2 datasets

Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap

Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap

Nr2f6 2 datasets

Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap

Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap

ONECUT3 1 dataset

Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap

POU1F1 2 datasets

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 2 datasets

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

POU2F2 2 datasets

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU3F3 2 datasets

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 296 bp overlap

POU5F1B 2 datasets

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

PPARA::RXRA 2 datasets

Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap

Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap

PPARD 2 datasets

Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap

Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap

PRDM1 1 dataset

ChIP fetal_testis GSE100639.PRDM1.fetal_testis 126 bp overlap

Pparg::Rxra 2 datasets

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RELA 1 dataset

ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 229 bp overlap

RREB1 1 dataset

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

RXRB 2 datasets

Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap

Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap

RXRG 2 datasets

Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap

Motif ES_0h ES_0h-RXRG_MA0856.1 14 bp overlap

Rxra 2 datasets

Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap

Motif ES_0h ES_0h-Rxra_MA0512.2 14 bp overlap

SATB1 2 datasets

Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap

Motif ES_0h ES_0h-SATB1_MA1963.2 7 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 194 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 359 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 328 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 188 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 169 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 224 bp overlap

SPIB 2 datasets

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap

STAT1 1 dataset

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap

THRB 2 datasets

Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap

Motif ES_0h ES_0h-THRB_MA1574.2 13 bp overlap

ZIM3 1 dataset

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

ZNF331 2 datasets

ChIP GM23338 ENCFF410NSZ 187 bp overlap

ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 160 bp overlap

ZNF75A 2 datasets

Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap

Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap

ZNF768 2 datasets

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap