chrX : 24,990,630 – 24,990,867
237 bp 36 TFs 0 linked genes
This 237 bp open chromatin element has no linked target genes and is bound by 36 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:24,985,630 – 24,995,867
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
BRD4 6 datasets
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 90 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 66 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 237 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 237 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 210 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 237 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 182 bp overlap
CTCF 119 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 237 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 219 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 181 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 147 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 237 bp overlap
ChIP A549 ENCFF182TCQ 160 bp overlap
ChIP A549 ENCFF669BWC 237 bp overlap
ChIP A673 ENCFF123WOM 191 bp overlap
ChIP AG04450 ENCFF116DJL 200 bp overlap
ChIP BE2C ENCFF757SRF 237 bp overlap
ChIP C4-2B ENCFF821XVN 237 bp overlap
ChIP D721Med ENCFF513FYD 175 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 144 bp overlap
ChIP GM23338 ENCFF531QOI 237 bp overlap
ChIP GM23338 ENCFF772DML 160 bp overlap
ChIP H1 ENCFF414GZI 155 bp overlap
ChIP H1 ENCFF764RHO 197 bp overlap
ChIP H9 ENCFF152GTF 195 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 203 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 138 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 191 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 178 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 237 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 237 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 237 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 191 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 201 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 216 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 170 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 170 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 225 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 150 bp overlap
ChIP IMR-90 GSE43070.CTCF.IMR-90 176 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 129 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 103 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 193 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 139 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 141 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 94 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 129 bp overlap
ChIP MCF-7 ENCFF139NQI 212 bp overlap
ChIP MCF-7 ENCFF162GNE 188 bp overlap
ChIP MCF-7 ENCFF198DQX 176 bp overlap
ChIP MCF-7 ENCFF414SZG 138 bp overlap
ChIP MCF-7 ENCFF494VXA 176 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 237 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 164 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 154 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 151 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 120 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 111 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 237 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 206 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 175 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 130 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 187 bp overlap
ChIP NPC GSE115407.CTCF.NPC 237 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 206 bp overlap
ChIP Panc1 ENCFF056JQX 237 bp overlap
ChIP Panc1 ENCFF056JQX 207 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 109 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 108 bp overlap
ChIP SK-N-SH ENCFF731NJX 184 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 145 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 131 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 97 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 237 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 176 bp overlap
ChIP astrocyte ENCFF042YJV 220 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 214 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 235 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 186 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 186 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 158 bp overlap
ChIP brain ENCFF163BBN 237 bp overlap
ChIP brain ENCFF685VRG 207 bp overlap
ChIP brain ENCFF685VRG 153 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 198 bp overlap
ChIP chondrocyte ENCFF134ORZ 151 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 189 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 222 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 237 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 188 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 196 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 237 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 237 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 237 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF457ZGY 237 bp overlap
ChIP endodermal cell ENCFF471YCZ 203 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 147 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 191 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 146 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 180 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 96 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 237 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 233 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 184 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 151 bp overlap
ChIP islet ERP004003.CTCF.islet 208 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 74 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 188 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 107 bp overlap
ChIP nephron ENCFF411ACD 237 bp overlap
ChIP nephron ENCFF411ACD 105 bp overlap
ChIP nephron ENCFF972IQB 237 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 237 bp overlap
ChIP neural cell ENCFF335ADI 219 bp overlap
ChIP neural crest cell ENCFF182LWK 237 bp overlap
ChIP neural progenitor cell ENCFF420RBO 163 bp overlap
ChIP neural progenitor cell ENCFF581WPG 237 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 236 bp overlap
ChIP neuron GSE115407.CTCF.neuron 237 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 130 bp overlap
ChIP osteocyte ENCFF929FPD 237 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 221 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 190 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 237 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 146 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 71 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 237 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 99 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 237 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 205 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 196 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 199 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 197 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 192 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 199 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 174 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 199 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 177 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 186 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 237 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 237 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 237 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 160 bp overlap
FOXA1 1 dataset
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 160 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 62 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 165 bp overlap
ChIP SK-N-SH ENCFF764OZD 138 bp overlap
GATA3 2 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 113 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 151 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 237 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 205 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 211 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 203 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 237 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 167 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 142 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 75 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 187 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 102 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 173 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 169 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 67 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 237 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 76 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 175 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 175 bp overlap
RAD21 8 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 112 bp overlap
ChIP A549 ENCFF047SFC 181 bp overlap
ChIP H1 ENCFF698EWO 177 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 182 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 125 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 140 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 237 bp overlap
ChIP neural cell ENCFF564MOT 157 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 190 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 69 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 155 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 93 bp overlap
SMC1A 3 datasets
ChIP A-549 GSE76893.SMC1A.A-549 145 bp overlap
ChIP MCF-7 GSE76893.SMC1A.MCF-7 155 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 146 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 237 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 135 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 135 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 135 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 237 bp overlap
ChIP neural cell ENCFF795YGY 237 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 237 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 169 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 128 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 128 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 178 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 148 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 148 bp overlap
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