chr20 : 46,898,312 46,898,778
466 bp 55 TFs 4 linked genes
This 466 bp open chromatin element is linked to 4 target genes and is bound by 55 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
EYA2 3.7 kb Proximal Proximity
SLC2A10 188.8 kb Distal Multiome
TP53RK 209.0 kb Distal Multiome
SLC13A3 247.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:46,893,312 – 46,903,778
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
BMI1 1 dataset
ChIP K-562 ENCSR782WRO.BMI1.K-562 157 bp overlap
Bcl11B 1 dataset
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 63 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 301 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 455 bp overlap
ESR1 2 datasets
ChIP endometrioid-adenocarcinoma_tumor_4 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_4 214 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 236 bp overlap
ETV1 1 dataset
Motif DE_72h DE_72h-ETV1_MA0761.3 9 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 320 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 251 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 50 bp overlap
ChIP HepG2 ENCFF912EIW 109 bp overlap
FOXA1 8 datasets
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 176 bp overlap
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 171 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 139 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 223 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 164 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 466 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 302 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 241 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 466 bp overlap
ChIP DE DE-FOXA2-2 466 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 466 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 466 bp overlap
ChIP DE DE-GATA4-2 466 bp overlap
ChIP foregut GSE117136.GATA4.foregut 466 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 428 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 260 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 466 bp overlap
ChIP DE DE-GATA6-2 466 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 403 bp overlap
ChIP foregut GSE117136.GATA6.foregut 436 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 360 bp overlap
IKZF2 1 dataset
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_72h DE_72h-Ikzf3_MA1992.2 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 276 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 466 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 284 bp overlap
KLF9 1 dataset
Motif DE_72h DE_72h-KLF9_MA1107.3 11 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 126 bp overlap
NR1I2 1 dataset
Motif DE_72h DE_72h-NR1I2_MA1533.2 15 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 149 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 123 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 186 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 343 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 173 bp overlap
Prdm5 1 dataset
Motif DE_72h DE_72h-Prdm5_MA1999.2 11 bp overlap
RNF2 3 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 156 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 321 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 176 bp overlap
RORC 1 dataset
Motif DE_72h DE_72h-RORC_MA1151.2 10 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
Rhox11 1 dataset
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 210 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 171 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 466 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 259 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 416 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 448 bp overlap
SMAD3 2 datasets
ChIP endoderm GSE29422.SMAD3.endoderm 190 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 175 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 442 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 437 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 425 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 466 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 426 bp overlap
SOX21 1 dataset
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 332 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 245 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 151 bp overlap
ZNF24 1 dataset
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF281 1 dataset
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF410 1 dataset
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZSCAN4 1 dataset
Motif DE_72h DE_72h-ZSCAN4_MA1155.1 15 bp overlap