chr20:46,091,736–46,092,300

chr20 : 46,091,736 – 46,092,300

564 bp 38 TFs 15 linked genes

This 564 bp open chromatin element is linked to 15 target genes and is bound by 38 transcription factors.

Linked Genes

15 genes

Gene	Expression	Dist. to TSS	Distance	Link type
NCOA5		1.8 kb	Proximal	Proximity
CD40		26.1 kb	Distal	Multiome
ZNF335		120.0 kb	Distal	Multiome
ENSG00000285796		157.2 kb	Distal	Multiome
PCIF1		157.5 kb	Distal	Multiome
PLTP		180.1 kb	Distal	Multiome
CTSA		200.9 kb	Distal	Multiome
NEURL2		201.7 kb	Distal	Multiome
ZSWIM3		234.6 kb	Distal	Multiome
ACOT8		234.8 kb	Distal	Multiome
SNX21		258.4 kb	Distal	Multiome
TNNC2		258.5 kb	Distal	Multiome
SLC35C2		272.2 kb	Distal	Multiome
UBE2C		279.6 kb	Distal	Multiome
DNTTIP1		300.3 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

38 transcription factors

ASCL1 1 dataset

Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap

Ahr::Arnt 1 dataset

Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

ChIP MCF-10A ERP003925.BRD4.MCF-10A 197 bp overlap

Bhlha15 1 dataset

Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap

Cebpa 5 datasets

ChIP BLaER1 ENCFF262VBH 312 bp overlap

ChIP BLaER1 ENCFF274GAT 260 bp overlap

ChIP BLaER1 ENCFF335XTP 240 bp overlap

ChIP BLaER1 ENCFF364PUR 227 bp overlap

ChIP BLaER1 ENCFF896HSY 131 bp overlap

ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 273 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 65 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 191 bp overlap

Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap

MYOD1 1 dataset

Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

ChIP WTC11 ENCFF751ZTQ 83 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NR2F2 1 dataset

ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 317 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 495 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap

Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap

RORC 2 datasets

ChIP HCC70 GSE126380.RORC.HCC70 540 bp overlap

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 564 bp overlap

SMARCC1 1 dataset

ChIP ESC S25-ESC-d0-BAF155-exp1 333 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 310 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 564 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 235 bp overlap

STAT3 1 dataset

ChIP WA01 ERP004237.STAT3.WA01 310 bp overlap

TFAP2A 1 dataset

Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap

TFAP2B 1 dataset

Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap

TFAP2C 1 dataset

Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap

TFAP2E 1 dataset

Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

TRIM25 1 dataset

ChIP BT-549 GSE79588.TRIM25.BT-549 289 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 395 bp overlap

ZNF664 1 dataset

ChIP HEK293 ENCFF343XSW 83 bp overlap

ZNF781 1 dataset

ChIP HepG2 ENCFF209OTE 162 bp overlap