chr20 : 23,473,311 – 23,473,616

305 bp 74 TFs 0 linked genes

This 305 bp open chromatin element has no linked target genes and is bound by 74 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

74 transcription factors

AFF4 1 dataset

ChIP WTC11 ENCFF556XTF 305 bp overlap

CDX4 1 dataset

Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap

CREB1 2 datasets

ChIP GM23338 ENCFF432ZEW 215 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 226 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 190 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

DUXA 1 dataset

Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap

EP300 2 datasets

ChIP WA01 ENCSR000BKK.EP300.WA01 175 bp overlap

ChIP hESC GSE17917.EP300.hESC 151 bp overlap

ETV6 1 dataset

ChIP WTC11 ENCFF812SCD 305 bp overlap

GATA6 5 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 305 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 305 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 305 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 305 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 305 bp overlap

GFI1 1 dataset

Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap

GLI3 1 dataset

Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 157 bp overlap

Gfi1B 1 dataset

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

Gli1 1 dataset

Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap

Gli2 1 dataset

Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap

HMBOX1 1 dataset

Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap

HNF1A 1 dataset

Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap

HNF1B 1 dataset

Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

JUN 3 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 305 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 143 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 305 bp overlap

KDM1A 1 dataset

ChIP H1 ENCFF696SGD 266 bp overlap

MAF::NFE2 1 dataset

Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 247 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 201 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 305 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 305 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 247 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 305 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 305 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 238 bp overlap

ChIP hESC GSE20650.NANOG.hESC 281 bp overlap

ChIP hESC GSE18292.NANOG.hESC 161 bp overlap

NFE2L1 1 dataset

ChIP WTC11 ENCFF644BPU 305 bp overlap

Nfe2l2 1 dataset

Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap

Nr2e1 1 dataset

Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

ChIP WTC11 ENCFF634NAO 228 bp overlap

PBX2 1 dataset

Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap

PHOX2A 1 dataset

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU5F1 10 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 305 bp overlap

ChIP GM23338 ENCFF333SNB 273 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 305 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 305 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 219 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 260 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 176 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 219 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 298 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 277 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 305 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap

PROP1 1 dataset

Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RFX2 1 dataset

Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap

RFX3 1 dataset

Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

SMAD2 1 dataset

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 240 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 305 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 305 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 305 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 305 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 305 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 162 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 229 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 187 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 199 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 232 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 153 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 305 bp overlap

Six3 1 dataset

Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 237 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 258 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 295 bp overlap

USF1 1 dataset

ChIP WTC11 ENCFF699QGS 301 bp overlap

ZNF121 1 dataset

ChIP WTC11 ENCFF291API 159 bp overlap

ZNF354A 1 dataset

Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 208 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 195 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Znf423 1 dataset

Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap