chr19:52,338,866–52,339,647

chr19 : 52,338,866 – 52,339,647

781 bp 56 TFs 15 linked genes

This 781 bp open chromatin element is linked to 15 target genes and is bound by 56 transcription factors.

Linked Genes

15 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ZNF610		2.6 kb	Proximal	Proximity
ZNF880		30.6 kb	Distal	Multiome
ZNF480		42.2 kb	Distal	Multiome
ZNF528-AS1		58.5 kb	Distal	Multiome
ZNF528		58.5 kb	Distal	Multiome
ZNF766		69.7 kb	Distal	Multiome
ZNF578		114.2 kb	Distal	Multiome
PPP2R1A		149.3 kb	Distal	Multiome
ZNF836		167.7 kb	Distal	Multiome
ZNF808		196.7 kb	Distal	Multiome
ZNF616		199.4 kb	Distal	Multiome
ZNF701		230.9 kb	Distal	Multiome
ZNF432		243.6 kb	Distal	Multiome
ENSG00000290073		261.9 kb	Distal	Multiome
ZNF83		351.2 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

56 transcription factors

ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 184 bp overlap

ChIP LNCaP ERP003503.AR.LNCaP 196 bp overlap

ChIP LNCaP GSE85558.AR.LNCaP 164 bp overlap

ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 133 bp overlap

ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 279 bp overlap

ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 200 bp overlap

ChIP LNCaP_R1881_HOTAIR GSE61268.AR.LNCaP_R1881_HOTAIR 147 bp overlap

ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 205 bp overlap

ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 189 bp overlap

ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 123 bp overlap

ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 169 bp overlap

ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 199 bp overlap

ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 225 bp overlap

ChIP VCaP GSE83650.AR.VCaP 201 bp overlap

ChIP VCaP GSE98809.AR.VCaP 201 bp overlap

ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 369 bp overlap

ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 377 bp overlap

ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 249 bp overlap

ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 468 bp overlap

ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 406 bp overlap

ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 510 bp overlap

ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 433 bp overlap

ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 236 bp overlap

ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 371 bp overlap

ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 132 bp overlap

ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 211 bp overlap

ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 244 bp overlap

ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 325 bp overlap

ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 389 bp overlap

ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 335 bp overlap

ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 359 bp overlap

ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 334 bp overlap

ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 221 bp overlap

ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 209 bp overlap

ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 112 bp overlap

ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 118 bp overlap

ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 130 bp overlap

ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 169 bp overlap

ASH2L 1 dataset

ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 182 bp overlap

Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap

BAF155 1 dataset

ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 236 bp overlap

BCL11A 1 dataset

Motif DE_72h DE_72h-BCL11A_MA2324.1 7 bp overlap

CBFA2T3 1 dataset

ChIP K562 ENCFF673OEZ 411 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF262VBH 216 bp overlap

ChIP BLaER1 ENCFF274GAT 73 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

ERF::FOXI1 1 dataset

Motif DE_72h DE_72h-ERFFOXI1_MA1935.2 10 bp overlap

ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 132 bp overlap

ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 155 bp overlap

ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 224 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_72h DE_72h-ETV2FOXI1_MA1942.2 11 bp overlap

FEZF2 1 dataset

Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_72h DE_72h-FLI1FOXI1_MA1950.2 11 bp overlap

FOS::JUN 1 dataset

Motif DE_72h DE_72h-FOSJUN_MA1126.2 10 bp overlap

FOXA1 6 datasets

ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 232 bp overlap

ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 177 bp overlap

ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 113 bp overlap

ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 271 bp overlap

ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 98 bp overlap

ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 188 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 781 bp overlap

ChIP DE DE-FOXA2-2 781 bp overlap

GATA1::TAL1 1 dataset

Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 1 dataset

Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 778 bp overlap

ChIP DE DE-GATA4-2 781 bp overlap

Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 397 bp overlap

GATA5 1 dataset

Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 753 bp overlap

ChIP DE DE-GATA6-2 781 bp overlap

Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 471 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

Gata3 1 dataset

Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap

HDAC3 1 dataset

ChIP VCaP_DHAT_2H GSE28950.HDAC3.VCaP_DHAT_2H 219 bp overlap

HOXB13 3 datasets

ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 105 bp overlap

ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 74 bp overlap

ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 204 bp overlap

Hoxa13 1 dataset

Motif DE_72h DE_72h-Hoxa13_MA0650.4 8 bp overlap

IKZF1 1 dataset

Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap

IKZF2 1 dataset

Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap

Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap

Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap

Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap

Mecom 1 dataset

Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

PITX1 1 dataset

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX2 1 dataset

Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap

PITX3 1 dataset

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

POLR2A 1 dataset

ChIP prostate gland ENCFF881OMH 157 bp overlap

Plagl1 1 dataset

Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap

Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap

RHOXF1 1 dataset

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 620 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 562 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 450 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 766 bp overlap

Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap

Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap

STAT1::STAT2 1 dataset

Motif DE_72h DE_72h-STAT1STAT2_MA0517.2 13 bp overlap

Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap

Stat2 1 dataset

Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap

TCF7L1 1 dataset

Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap

TRPS1 1 dataset

Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap

ZBTB12 1 dataset

Motif DE_72h DE_72h-ZBTB12_MA1649.2 7 bp overlap

ZNF143 1 dataset

Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap

ZNF184 1 dataset

Motif DE_72h DE_72h-ZNF184_MA2120.1 13 bp overlap

ZNF213 1 dataset

Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap

ZNF281 2 datasets

Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap

ChIP K562 ENCFF594VNM 471 bp overlap