chr1 : 246,789,521 246,789,886
365 bp 48 TFs 2 linked genes
This 365 bp open chromatin element is linked to ENSG00000293403 and LINC01341 and is bound by 48 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000293403 at TSS At TSS Proximity
LINC01341 418 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:246,784,521 – 246,794,886
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 365 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 365 bp overlap
AGO2 1 dataset
ChIP HepG2 ENCFF252VFI 132 bp overlap
AR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 198 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 319 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 365 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 365 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 350 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 229 bp overlap
CTCFL 1 dataset
Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 102 bp overlap
ChIP BLaER1 ENCFF460KDD 255 bp overlap
FOXA1 1 dataset
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 115 bp overlap
FOXA2 2 datasets
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 129 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 164 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 126 bp overlap
GRHL2 1 dataset
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HOXA9 1 dataset
Motif ES_0h ES_0h-HOXA9_MA0594.3 7 bp overlap
IRF5 1 dataset
Motif ES_0h ES_0h-IRF5_MA1420.1 14 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 224 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 88 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MED1 2 datasets
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 155 bp overlap
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 365 bp overlap
MTA1 2 datasets
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 295 bp overlap
ChIP HepG2 ENCFF038CCB 146 bp overlap
MTF1 1 dataset
Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap
NFKB1 1 dataset
Motif ES_0h ES_0h-NFKB1_MA0105.4 13 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 69 bp overlap
POLR2G 1 dataset
ChIP K562 ENCFF648YPL 153 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 146 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 183 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
PROX1 1 dataset
Motif ES_0h ES_0h-PROX1_MA0794.1 12 bp overlap
RBM39 2 datasets
ChIP HepG2 ENCFF084YZE 271 bp overlap
ChIP HepG2 ENCFF084YZE 68 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 346 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 96 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 206 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 212 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 92 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 124 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 186 bp overlap
ZNF407 1 dataset
ChIP HepG2 ENCFF537FDC 53 bp overlap