chr17 : 28,984,463 – 28,984,954
491 bp 33 TFs 13 linked genes
This 491 bp open chromatin element is linked to 13 target genes and is bound by 33 transcription factors.
Linked Genes
13 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PHF12 33.0 kb Distal Multiome
PIPOX 34.0 kb Distal Multiome
DHRS13 81.7 kb Distal Multiome
FLOT2 87.0 kb Distal Multiome
ERAL1 129.6 kb Distal Multiome
FAM222B 141.8 kb Distal Multiome
MYO18A 195.8 kb Distal Multiome
TRAF4 240.6 kb Distal Multiome
TLCD1 256.7 kb Distal Multiome
NEK8 258.7 kb Distal Multiome
RPL23A 264.4 kb Distal Multiome
RAB34 266.2 kb Distal Multiome
PROCA1 272.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:28,979,463 – 28,989,954
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AR 1 dataset
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 169 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 178 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 135 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 348 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 194 bp overlap
Bach1::Mafk 1 dataset
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
CTCF 1 dataset
Motif DE_72h DE_72h-CTCF_MA1930.2 33 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 215 bp overlap
E2F6 1 dataset
Motif DE_72h DE_72h-E2F6_MA0471.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 246 bp overlap
ESR1 2 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 399 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 270 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 257 bp overlap
ChIP DE DE-FOXA2-1 376 bp overlap
ChIP DE DE-FOXA2-2 359 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 184 bp overlap
ChIP DE DE-GATA4-1 491 bp overlap
ChIP DE DE-GATA4-2 491 bp overlap
ChIP foregut GSE117136.GATA4.foregut 448 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 491 bp overlap
ChIP DE DE-GATA6-2 491 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 491 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 467 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 463 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 491 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 491 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 491 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 303 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 491 bp overlap
ChIP foregut GSE117136.GATA6.foregut 436 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 336 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 221 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 265 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 202 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 213 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 212 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 304 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 479 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 471 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 466 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 436 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 404 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 491 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 491 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 261 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 285 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 189 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 340 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 390 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 185 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 373 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
TFDP1 1 dataset
Motif DE_72h DE_72h-TFDP1_MA1122.2 8 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF189 1 dataset
Motif DE_72h DE_72h-ZNF189_MA1725.2 9 bp overlap
ZNF331 1 dataset
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 240 bp overlap
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