chr17 : 1,210,129 1,211,219
1,090 bp 35 TFs 6 linked genes
This 1.1 kb open chromatin element is linked to 6 target genes and is bound by 35 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
ABR 30.7 kb Distal Multiome
YWHAE 189.5 kb Distal Multiome
TIMM22 213.6 kb Distal Multiome
NXN 230.9 kb Distal Multiome
CRK 245.5 kb Distal Multiome
MYO1C 274.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:1,205,129 – 1,216,219
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116_SERUM GSE30267.AFF4.HCT-116_SERUM 133 bp overlap
AR 2 datasets
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 178 bp overlap
ChIP VCaP GSE148358.AR.VCaP 332 bp overlap
BCL3 2 datasets
ChIP GM12878 ENCFF854PAY 351 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 126 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 229 bp overlap
CBX2 2 datasets
ChIP K-562 ENCSR000ATU.CBX2.K-562 335 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 296 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 121 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 266 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 413 bp overlap
ChIP BLaER1 ENCFF460KDD 264 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 213 bp overlap
EP300 1 dataset
ChIP neural cell ENCFF442QNK 196 bp overlap
ERG 3 datasets
ChIP VCaP GSE49091.ERG.VCaP 188 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 255 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 197 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 992 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 264 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 809 bp overlap
ChIP DE DE-FOXA2-2 758 bp overlap
GABPA 2 datasets
ChIP VCaP GSE49091.GABPA.VCaP 218 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 231 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 281 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 281 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 162 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 935 bp overlap
ChIP DE DE-GATA4-2 967 bp overlap
ChIP foregut GSE117136.GATA4.foregut 718 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 702 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 830 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 136 bp overlap
ChIP DE DE-GATA6-1 929 bp overlap
ChIP DE DE-GATA6-2 1090 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 393 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 425 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 111 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 882 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 510 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 380 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 789 bp overlap
ChIP foregut GSE117136.GATA6.foregut 842 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 385 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 656 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 804 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 834 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 131 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 248 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 290 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 177 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 230 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 178 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 150 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR116TFA.NR3C1.A-549 120 bp overlap
ONECUT2 2 datasets
ChIP A-549 GSE102599.ONECUT2.A-549 251 bp overlap
ChIP A-549 GSE102599.ONECUT2.A-549 596 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCFF285BQQ 217 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 289 bp overlap
PKNOX1 4 datasets
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 290 bp overlap
ChIP HEK293T ENCFF174WDB 391 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 225 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 328 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 385 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 195 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 212 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 979 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 282 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1057 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1090 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 313 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 577 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 814 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap