chr1 : 241,849,363 – 241,849,568
205 bp 33 TFs 2 linked genes
This 205 bp open chromatin element is linked to EXO1 and ENSG00000288723 and is bound by 33 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EXO1 1.2 kb Proximal Proximity
ENSG00000288723 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:241,844,363 – 241,854,568
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 68 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 101 bp overlap
ChIP K562 ENCFF674KTF 187 bp overlap
BRD4 1 dataset
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 68 bp overlap
CTCF 58 datasets
ChIP DOHH2 ENCFF637WNW 205 bp overlap
ChIP DOHH2 ENCFF637WNW 53 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 205 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 107 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 114 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 90 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 111 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 123 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 179 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 84 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 80 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 140 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 116 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 95 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 122 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 161 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 88 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 195 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 126 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 198 bp overlap
ChIP K562 ENCFF400DFR 147 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 78 bp overlap
ChIP Loucy ENCFF359TVQ 205 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 205 bp overlap
ChIP MCF-7 ENCFF198DQX 162 bp overlap
ChIP MCF-7 ENCFF494VXA 162 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 108 bp overlap
ChIP MM.1S ENCFF869JMQ 205 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 203 bp overlap
ChIP NCI-H929 ENCFF305JAB 205 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 205 bp overlap
ChIP OCI-LY1 ENCFF455ESK 201 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 205 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 107 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 176 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 129 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 205 bp overlap
ChIP PC-3 ENCFF487TUI 205 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 170 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 205 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 104 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 205 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 74 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 200 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 165 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 122 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 150 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 110 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 205 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 167 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 169 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 129 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 100 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 102 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 99 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 164 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 93 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 115 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 90 bp overlap
FOXA2 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 205 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 205 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 205 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 75 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 205 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 195 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 108 bp overlap
MEN1 2 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 148 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 153 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 128 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 146 bp overlap
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 96 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 173 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 184 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCFF174WDB 144 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 205 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 205 bp overlap
RAD21 1 dataset
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 113 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 148 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 50 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 89 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 145 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 205 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 121 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 97 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 205 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 205 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 154 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 205 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 158 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 137 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 205 bp overlap
ZNF34 1 dataset
ChIP HEK293 ENCFF481TFV 205 bp overlap
ZNF561 1 dataset
ChIP HEK293 ENCSR125ULS.ZNF561.HEK293 205 bp overlap
ZNF7 1 dataset
ChIP HEK293T GSE78099.ZNF7.HEK293T 167 bp overlap
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