chr16 : 12,903,554 12,903,727
173 bp 31 TFs 1 linked gene
This 173 bp open chromatin element is linked to SHISA9 and is bound by 31 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SHISA9 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:12,898,554 – 12,908,727
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 131 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 159 bp overlap
CTCF 15 datasets
ChIP RH4 GSE83726.CTCF.RH4 166 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 173 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 133 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 173 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 173 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 173 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 173 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 173 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 173 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 173 bp overlap
ChIP neural progenitor cell ENCFF420RBO 173 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 168 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 173 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 173 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 173 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCFF692OYJ 58 bp overlap
EHMT2 1 dataset
ChIP Rh41 GSE118666.EHMT2.Rh41 168 bp overlap
EZH2 12 datasets
ChIP A673 ENCFF790MVL 173 bp overlap
ChIP GM23248 ENCFF404ZHM 173 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 78 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 154 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 173 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 173 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 173 bp overlap
ChIP hepatocyte ENCFF118DKH 62 bp overlap
ChIP hepatocyte ENCFF552DZB 111 bp overlap
ChIP hepatocyte ENCFF552DZB 173 bp overlap
ChIP keratinocyte ENCFF070STK 89 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 103 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 164 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 112 bp overlap
HNRNPLL 4 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 143 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 101 bp overlap
ChIP K562 ENCFF541ZGX 173 bp overlap
ChIP K562 ENCFF598PWW 173 bp overlap
JUN 3 datasets
ChIP 786-O GSE86092.JUN.786-O 125 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 173 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 173 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 173 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 165 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 105 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 79 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 173 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 67 bp overlap
PCBP1 1 dataset
ChIP HepG2 ENCFF447SRJ 136 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 173 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 173 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 81 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 171 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 173 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 169 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 173 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 173 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 127 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 173 bp overlap
SUZ12 1 dataset
ChIP LNCaP GSE39459.SUZ12.LNCaP 161 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 116 bp overlap