chr1 : 238,598,124 – 238,598,667

543 bp 93 TFs 0 linked genes

This 543 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

93 transcription factors

ALX3 1 dataset

Motif DE_60h DE_60h-ALX3_MA0634.2 6 bp overlap

ARGFX 1 dataset

Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap

BACH2 1 dataset

Motif DE_60h DE_60h-BACH2_MA1470.2 19 bp overlap

CTCF 1 dataset

ChIP esophagus squamous epithelium ENCFF884RED 421 bp overlap

Crx 3 datasets

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

DPRX 3 datasets

Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap

Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap

Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap

DRGX 1 dataset

Motif DE_60h DE_60h-DRGX_MA1481.2 6 bp overlap

EMX1 1 dataset

Motif DE_60h DE_60h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_60h DE_60h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_60h DE_60h-EN1_MA0027.3 6 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 255 bp overlap

ESX1 1 dataset

Motif DE_60h DE_60h-ESX1_MA0644.3 7 bp overlap

EVX1 1 dataset

Motif DE_60h DE_60h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_60h DE_60h-EVX2_MA0888.2 6 bp overlap

FOSL1::JUND 1 dataset

Motif DE_60h DE_60h-FOSL1JUND_MA1143.2 9 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 478 bp overlap

ChIP DE DE-FOXA2-2 438 bp overlap

FOXE1 1 dataset

Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap

FOXH1 3 datasets

Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap

Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap

Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 448 bp overlap

ChIP DE DE-GATA4-2 395 bp overlap

ChIP foregut GSE117136.GATA4.foregut 297 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 427 bp overlap

ChIP DE DE-GATA6-2 477 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 243 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 346 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 504 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 391 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 353 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 460 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 318 bp overlap

GSC 3 datasets

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 3 datasets

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

GSX1 1 dataset

Motif DE_60h DE_60h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_60h DE_60h-GSX2_MA0893.3 7 bp overlap

HOXA1 1 dataset

Motif DE_60h DE_60h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_60h DE_60h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap

HOXA5 1 dataset

Motif DE_60h DE_60h-HOXA5_MA0158.2 8 bp overlap

HOXA6 1 dataset

Motif DE_60h DE_60h-HOXA6_MA1497.2 7 bp overlap

HOXB1 1 dataset

Motif DE_60h DE_60h-HOXB1_MA2093.1 7 bp overlap

HOXB2 1 dataset

Motif DE_60h DE_60h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_60h DE_60h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_60h DE_60h-HOXB5_MA0904.3 6 bp overlap

HOXB6 1 dataset

Motif DE_60h DE_60h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_60h DE_60h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_60h DE_60h-HOXB8_MA1502.2 7 bp overlap

HOXC8 1 dataset

Motif DE_60h DE_60h-HOXC8_MA1505.2 6 bp overlap

HOXD3 1 dataset

Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap

HOXD8 1 dataset

Motif DE_60h DE_60h-HOXD8_MA0910.3 7 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

ISX 1 dataset

Motif DE_60h DE_60h-ISX_MA0654.2 6 bp overlap

KLF9 1 dataset

Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap

LHX5 1 dataset

Motif DE_60h DE_60h-LHX5_MA1519.2 7 bp overlap

LHX6 1 dataset

Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap

LIN54 2 datasets

Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap

Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap

LMX1A 1 dataset

Motif DE_60h DE_60h-LMX1A_MA0702.3 7 bp overlap

LMX1B 1 dataset

Motif DE_60h DE_60h-LMX1B_MA0703.3 8 bp overlap

Lhx1 1 dataset

Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap

Lhx4 1 dataset

Motif DE_60h DE_60h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_60h DE_60h-Lhx8_MA0705.2 6 bp overlap

MEOX1 1 dataset

Motif DE_60h DE_60h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_60h DE_60h-MEOX2_MA0706.2 7 bp overlap

MGA::EVX1 4 datasets

Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap

Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap

Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap

MIXL1 1 dataset

Motif DE_60h DE_60h-MIXL1_MA0662.2 6 bp overlap

MLX 1 dataset

Motif DE_60h DE_60h-MLX_MA0663.1 10 bp overlap

MNX1 1 dataset

Motif DE_60h DE_60h-MNX1_MA0707.3 6 bp overlap

NEUROD1 1 dataset

ChIP D283-Med GSE92582.NEUROD1.D283-Med 201 bp overlap

NKX6-1 1 dataset

Motif DE_60h DE_60h-NKX6-1_MA0674.2 7 bp overlap

NKX6-2 1 dataset

Motif DE_60h DE_60h-NKX6-2_MA0675.2 6 bp overlap

NOTO 1 dataset

Motif DE_60h DE_60h-NOTO_MA0710.2 7 bp overlap

Nr5A2 1 dataset

Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap

OTX1 3 datasets

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

PDX1 1 dataset

Motif DE_60h DE_60h-PDX1_MA0132.3 6 bp overlap

PITX1 3 datasets

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX3 3 datasets

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

POU6F1 1 dataset

Motif DE_60h DE_60h-POU6F1_MA0628.2 6 bp overlap

PRRX1 1 dataset

Motif DE_60h DE_60h-PRRX1_MA0716.2 6 bp overlap

Prdm4 1 dataset

Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap

RAX2 1 dataset

Motif DE_60h DE_60h-RAX2_MA0717.2 6 bp overlap

RHOXF1 3 datasets

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

RUNX3 1 dataset

Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap

Rarg 1 dataset

Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap

SHOX 1 dataset

Motif DE_60h DE_60h-SHOX_MA0630.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 449 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 286 bp overlap

SOX11 1 dataset

ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 104 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 261 bp overlap

STAT3 2 datasets

Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap

Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap

Shox2 1 dataset

Motif DE_60h DE_60h-Shox2_MA0720.2 6 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap

THRA 2 datasets

Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap

THRB 1 dataset

Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap

TLX2 1 dataset

Motif DE_60h DE_60h-TLX2_MA1577.2 6 bp overlap

UNCX 1 dataset

Motif DE_60h DE_60h-UNCX_MA0721.2 6 bp overlap

VAX1 1 dataset

Motif DE_60h DE_60h-VAX1_MA0722.2 7 bp overlap

VAX2 1 dataset

Motif DE_60h DE_60h-VAX2_MA0723.3 6 bp overlap

VSX1 1 dataset

Motif DE_60h DE_60h-VSX1_MA0725.2 7 bp overlap

VSX2 1 dataset

Motif DE_60h DE_60h-VSX2_MA0726.2 7 bp overlap

ZFP42 1 dataset

Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap

ZNF257 1 dataset

Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap

ZNF354C 3 datasets

Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap

Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap

Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap

mix-a 1 dataset

Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap