chr15 : 29,129,572 29,130,462
890 bp 57 TFs 2 linked genes
This 890 bp open chromatin element is linked to NSMCE3 and APBA2 and is bound by 57 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
NSMCE3 139.7 kb Distal Multiome+HiCAR
APBA2 243.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:29,124,572 – 29,135,462
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 475 bp overlap
Cebpa 7 datasets
ChIP BLaER1 ENCFF031ISE 213 bp overlap
ChIP BLaER1 ENCFF093OYK 247 bp overlap
ChIP BLaER1 ENCFF093OYK 251 bp overlap
ChIP BLaER1 ENCFF274GAT 279 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
ChIP BLaER1 ENCFF844FIP 191 bp overlap
ChIP BLaER1 ENCFF858JKM 129 bp overlap
E2F6 3 datasets
Motif DE_48h DE_48h-E2F6_MA0471.3 8 bp overlap
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
E2F7 1 dataset
Motif DE_60h DE_60h-E2F7_MA0758.1 14 bp overlap
E2F8 1 dataset
Motif DE_60h DE_60h-E2F8_MA0865.3 9 bp overlap
EGR1 5 datasets
Motif DE_48h DE_48h-EGR1_MA0162.5 10 bp overlap
Motif DE_60h DE_60h-EGR1_MA0162.5 10 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 264 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 193 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
EGR2 2 datasets
Motif DE_48h DE_48h-EGR2_MA0472.2 11 bp overlap
Motif DE_60h DE_60h-EGR2_MA0472.2 11 bp overlap
EGR3 2 datasets
Motif DE_48h DE_48h-EGR3_MA0732.2 11 bp overlap
Motif DE_60h DE_60h-EGR3_MA0732.2 11 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 309 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 251 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 385 bp overlap
ChIP DE DE-FOXA2-2 439 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 231 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 813 bp overlap
ChIP DE DE-GATA4-2 862 bp overlap
ChIP foregut GSE117136.GATA4.foregut 437 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 304 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 594 bp overlap
ChIP DE DE-GATA6-2 850 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 820 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 610 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 631 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 713 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 709 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 756 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 640 bp overlap
ChIP foregut GSE117136.GATA6.foregut 460 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 544 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 339 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 304 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 449 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 378 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 564 bp overlap
KLF1 1 dataset
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_60h DE_60h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_60h DE_60h-KLF15_MA1513.2 8 bp overlap
KLF2 1 dataset
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
Motif DE_60h DE_60h-KLF7_MA1959.2 8 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
PATZ1 1 dataset
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
PRDM9 2 datasets
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
RBPJ 2 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 608 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 684 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 679 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 617 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 618 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 610 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 652 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 579 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 263 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 551 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 285 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 499 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 718 bp overlap
SP2 1 dataset
Motif DE_60h DE_60h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SS18 2 datasets
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 595 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 74 bp overlap
TBX1 2 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX21 2 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX5 2 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 117 bp overlap
Tbx6 4 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZIC1 1 dataset
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
ZNF257 1 dataset
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
ZNF281 2 datasets
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF549 1 dataset
Motif DE_60h DE_60h-ZNF549_MA1728.2 8 bp overlap
ZNF682 2 datasets
Motif DE_48h DE_48h-ZNF682_MA1599.2 11 bp overlap
Motif DE_60h DE_60h-ZNF682_MA1599.2 11 bp overlap
ZNF75D 2 datasets
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap