Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

35 transcription factors

ATF4 1 dataset

Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap

ATRX 1 dataset

ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 87 bp overlap

BRD4 3 datasets

ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 220 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 233 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 184 bp overlap

CEBPG 1 dataset

Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF844FIP 151 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 225 bp overlap

ChIP neural cell ENCFF442QNK 178 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 56 bp overlap

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 50 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

GATA6 2 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 157 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 172 bp overlap

Gfi1B 1 dataset

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

MRTFB 1 dataset

ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 195 bp overlap

MXI1 1 dataset

ChIP neural cell ENCFF623HQN 90 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NFYA 2 datasets

Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap

Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap

NFYB 2 datasets

Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap

Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 132 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

RAD21 5 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 211 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 94 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 164 bp overlap

ChIP neural ENCSR198ZYJ.RAD21.neural 214 bp overlap

ChIP neural cell ENCFF564MOT 124 bp overlap

REST 2 datasets

ChIP neural ENCSR000BTV.REST.neural 138 bp overlap

ChIP neural cell ENCFF882LXX 84 bp overlap

SIX1 1 dataset

Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 267 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 267 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 240 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 267 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 267 bp overlap

SMARCA4 1 dataset

ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 267 bp overlap

SMC3 2 datasets

ChIP neural ENCSR404BPV.SMC3.neural 181 bp overlap

ChIP neural cell ENCFF795YGY 77 bp overlap

SNAI3 1 dataset

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 232 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZKSCAN1 1 dataset

Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap

ZKSCAN3 2 datasets

Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap

Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Genome Browser