chr13 : 114,333,878 – 114,334,183

305 bp 74 TFs 1 linked gene

This 305 bp open chromatin element is linked to LINC01054 and is bound by 74 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01054		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

74 transcription factors

ALX3 1 dataset

Motif DE_48h DE_48h-ALX3_MA0634.2 6 bp overlap

ARID3A 1 dataset

ChIP GM12878 ENCFF006WWZ 182 bp overlap

ATF2 1 dataset

ChIP GM12878 ENCFF521LQJ 288 bp overlap

BATF 1 dataset

ChIP GM12878 ENCFF954REE 136 bp overlap

BHLHE40 1 dataset

ChIP GM12878 ENCFF521IZR 202 bp overlap

CEBPB 1 dataset

ChIP H1 ENCFF871PTR 190 bp overlap

CTCF 1 dataset

ChIP endodermal cell ENCFF471YCZ 305 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF274GAT 283 bp overlap

ChIP BLaER1 ENCFF460KDD 130 bp overlap

DMRTA1 1 dataset

Motif DE_48h DE_48h-DMRTA1_MA1707.2 10 bp overlap

DMRTA2 1 dataset

Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap

DRGX 1 dataset

Motif DE_48h DE_48h-DRGX_MA1481.2 6 bp overlap

EED 1 dataset

ChIP GM12878 ENCFF266FYW 200 bp overlap

EMX1 1 dataset

Motif DE_48h DE_48h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_48h DE_48h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_48h DE_48h-EN1_MA0027.3 6 bp overlap

EVX1 1 dataset

Motif DE_48h DE_48h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_48h DE_48h-EVX2_MA0888.2 6 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-1 296 bp overlap

GATA2 3 datasets

Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap

ChIP SH-SY5Y ENCFF485YIB 305 bp overlap

ChIP SK-N-SH ENCFF764OZD 305 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 297 bp overlap

ChIP DE DE-GATA4-2 305 bp overlap

Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap

GATA5 1 dataset

Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-1 305 bp overlap

ChIP DE DE-GATA6-2 305 bp overlap

Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 236 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 250 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 305 bp overlap

GSX1 1 dataset

Motif DE_48h DE_48h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_48h DE_48h-GSX2_MA0893.3 7 bp overlap

Gata3 1 dataset

Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap

HOXA1 1 dataset

Motif DE_48h DE_48h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_48h DE_48h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap

HOXA6 1 dataset

Motif DE_48h DE_48h-HOXA6_MA1497.2 7 bp overlap

HOXB1 1 dataset

Motif DE_48h DE_48h-HOXB1_MA2093.1 7 bp overlap

HOXB2 1 dataset

Motif DE_48h DE_48h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_48h DE_48h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_48h DE_48h-HOXB5_MA0904.3 6 bp overlap

HOXB6 1 dataset

Motif DE_48h DE_48h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_48h DE_48h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_48h DE_48h-HOXB8_MA1502.2 7 bp overlap

HOXC8 1 dataset

Motif DE_48h DE_48h-HOXC8_MA1505.2 6 bp overlap

HOXD8 1 dataset

Motif DE_48h DE_48h-HOXD8_MA0910.3 7 bp overlap

IKZF1 2 datasets

ChIP GM12878 ENCFF753XDO 305 bp overlap

ChIP GM12878 ENCFF753XDO 163 bp overlap

IKZF2 1 dataset

ChIP GM12878 ENCFF918AID 203 bp overlap

ISX 1 dataset

Motif DE_48h DE_48h-ISX_MA0654.2 6 bp overlap

LHX5 1 dataset

Motif DE_48h DE_48h-LHX5_MA1519.2 7 bp overlap

Lhx1 1 dataset

Motif DE_48h DE_48h-Lhx1_MA1518.3 10 bp overlap

Lhx4 1 dataset

Motif DE_48h DE_48h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_48h DE_48h-Lhx8_MA0705.2 6 bp overlap

MEOX1 1 dataset

Motif DE_48h DE_48h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_48h DE_48h-MEOX2_MA0706.2 7 bp overlap

MGA::EVX1 1 dataset

Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap

MIXL1 1 dataset

Motif DE_48h DE_48h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_48h DE_48h-MNX1_MA0707.3 6 bp overlap

NFIC 1 dataset

ChIP GM12878 ENCFF259FWL 284 bp overlap

NKX6-2 1 dataset

Motif DE_48h DE_48h-NKX6-2_MA0675.2 6 bp overlap

PDX1 1 dataset

Motif DE_48h DE_48h-PDX1_MA0132.3 6 bp overlap

POU2F2 1 dataset

ChIP GM12878 ENCFF207RKY 238 bp overlap

POU3F2 1 dataset

Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap

POU6F1 1 dataset

Motif DE_48h DE_48h-POU6F1_MA0628.2 6 bp overlap

POU6F2 1 dataset

Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap

PRRX1 1 dataset

Motif DE_48h DE_48h-PRRX1_MA0716.2 6 bp overlap

RAX2 1 dataset

Motif DE_48h DE_48h-RAX2_MA0717.2 6 bp overlap

RUNX3 1 dataset

ChIP GM12878 ENCFF395WHA 160 bp overlap

SHOX 1 dataset

Motif DE_48h DE_48h-SHOX_MA0630.2 6 bp overlap

SIX1 1 dataset

Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap

SIX2 1 dataset

Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 271 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 285 bp overlap

Shox2 1 dataset

Motif DE_48h DE_48h-Shox2_MA0720.2 6 bp overlap

TLX2 1 dataset

Motif DE_48h DE_48h-TLX2_MA1577.2 6 bp overlap

TRPS1 1 dataset

Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap

UNCX 1 dataset

Motif DE_48h DE_48h-UNCX_MA0721.2 6 bp overlap

VAX2 1 dataset

Motif DE_48h DE_48h-VAX2_MA0723.3 6 bp overlap

ZBTB32 1 dataset

Motif DE_48h DE_48h-ZBTB32_MA1580.1 10 bp overlap

ZNF652 1 dataset

Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap

mix-a 1 dataset

Motif DE_48h DE_48h-mix-a_MA0621.2 7 bp overlap