chr13 : 114,261,338 114,261,888
550 bp 51 TFs 4 linked genes
This 550 bp open chromatin element is linked to 4 target genes and is bound by 51 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
UPF3A 20.0 kb Distal Multiome
CDC16 26.7 kb Distal Multiome
CHAMP1 52.9 kb Distal Multiome
RASA3 129.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:114,256,338 – 114,266,888
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 167 bp overlap
BARX2 1 dataset
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BRD4 5 datasets
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 550 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 236 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 238 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 204 bp overlap
ChIP P493-6_MYC_0H GSE42262.BRD4.P493-6_MYC_0H 164 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 239 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 334 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 238 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 550 bp overlap
ChIP DE DE-FOXA2-2 550 bp overlap
FOXP1 1 dataset
ChIP LNCaP GSE62492.FOXP1.LNCaP 174 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 192 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 550 bp overlap
ChIP DE DE-GATA4-2 550 bp overlap
ChIP foregut GSE117136.GATA4.foregut 397 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 550 bp overlap
ChIP DE DE-GATA6-2 550 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 502 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 431 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 523 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 492 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 541 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 542 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 422 bp overlap
ChIP foregut GSE117136.GATA6.foregut 415 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 348 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 230 bp overlap
HOXA4 1 dataset
Motif DE_72h DE_72h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_72h DE_72h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_72h DE_72h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_72h DE_72h-HOXD4_MA1507.2 6 bp overlap
JUNB 1 dataset
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 198 bp overlap
KMT2A 2 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 312 bp overlap
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 182 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 133 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 190 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 218 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 175 bp overlap
MYC 2 datasets
ChIP P493-6 GSE77061.MYC.P493-6 195 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 161 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 179 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 227 bp overlap
PAX6 1 dataset
ChIP EndoC-betaH2 GSE87530.PAX6.EndoC-betaH2 175 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 259 bp overlap
POU6F1 1 dataset
Motif DE_72h DE_72h-POU6F1_MA1549.2 7 bp overlap
PPARG 1 dataset
Motif DE_72h DE_72h-PPARG_MA0066.2 19 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 155 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
SFMBT1 1 dataset
ChIP HeLa GSE45441.SFMBT1.HeLa 259 bp overlap
SMAD2 2 datasets
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 143 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 531 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 529 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 302 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 475 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 482 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 326 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 280 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 378 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 281 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 375 bp overlap
Vdr 1 dataset
Motif DE_72h DE_72h-Vdr_MA0693.4 7 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 341 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF383 1 dataset
ChIP HEK293T GSE78099.ZNF383.HEK293T 234 bp overlap
ZNF75D 1 dataset
Motif DE_72h DE_72h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN16 1 dataset
Motif DE_72h DE_72h-ZSCAN16_MA2100.1 18 bp overlap
Zic3 1 dataset
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap