chr13 : 94,138,723 94,139,916
1,193 bp 65 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:94,133,723 – 94,144,916
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 153 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 471 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 217 bp overlap
ATF4 1 dataset
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 459 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 208 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 245 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 187 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 437 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 341 bp overlap
CEBPG 1 dataset
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
CTCF 1 dataset
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 310 bp overlap
ChIP hESC GSE26097.EOMES.hESC 179 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 424 bp overlap
ChIP neural cell ENCFF442QNK 317 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 147 bp overlap
FEZF2 1 dataset
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 314 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 1013 bp overlap
ChIP DE DE-FOXA2-2 961 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 64 bp overlap
GATA2 8 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 148 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 416 bp overlap
ChIP SK-N-SH ENCFF764OZD 409 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCFF764OZD 305 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 187 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 152 bp overlap
GATA3 9 datasets
ChIP BE2C GSE65664.GATA3.BE2C 240 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 263 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 244 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 382 bp overlap
ChIP NGP GSE65664.GATA3.NGP 172 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 417 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 502 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 7 datasets
ChIP A-549 GSE85002.GATA4.A-549 180 bp overlap
ChIP DE DE-GATA4-1 580 bp overlap
ChIP DE DE-GATA4-1 414 bp overlap
ChIP DE DE-GATA4-2 1155 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 664 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 307 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 500 bp overlap
ChIP AGS GSE51936.GATA6.AGS 102 bp overlap
ChIP DE DE-GATA6-1 648 bp overlap
ChIP DE DE-GATA6-2 1193 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 702 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 887 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1193 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1193 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 775 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 318 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 348 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HAND2 5 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 482 bp overlap
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 511 bp overlap
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 422 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 195 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 493 bp overlap
ChIP SK-N-SH ENCFF285GEQ 485 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 796 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 508 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 864 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 738 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 517 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 1193 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 534 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 480 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 180 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 238 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 97 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 195 bp overlap
NFATC3 1 dataset
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NR4A1 1 dataset
Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nr2e1 1 dataset
Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap
PBX3 1 dataset
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 170 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 150 bp overlap
Prdm4 1 dataset
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 298 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 324 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1193 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1193 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 845 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 167 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 806 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 1126 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 838 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1193 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1193 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 249 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 589 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 586 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 346 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 433 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 188 bp overlap
SREBF1 1 dataset
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
SS18 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SS18.NGP_ARID1A-mut1 177 bp overlap
Stat2 1 dataset
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 239 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 270 bp overlap
ChIP Kelly GSE94822.TBX2.Kelly 149 bp overlap
TFAP4 2 datasets
Motif DE_36h DE_36h-TFAP4_MA1570.1 10 bp overlap
ChIP DLD-1 GSE46935.TFAP4.DLD-1 139 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 216 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 441 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 301 bp overlap
ZNF143 2 datasets
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF384 1 dataset
Motif DE_36h DE_36h-ZNF384_MA1125.2 8 bp overlap
ZNF547 1 dataset
Motif DE_36h DE_36h-ZNF547_MA2334.1 13 bp overlap
Zfp809 1 dataset
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap