chr13 : 49,329,862 49,330,174
312 bp 89 TFs 0 linked genes
This 312 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:49,324,862 – 49,335,174
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_60h DE_60h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_60h DE_60h-ARGFX_MA1463.2 8 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 186 bp overlap
BHLHE22 2 datasets
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
BRD4 1 dataset
ChIP HCT-15 GSE73319.BRD4.HCT-15 289 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 216 bp overlap
ChIP K562 ENCFF673OEZ 312 bp overlap
CTCF 7 datasets
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
ChIP H1 ENCFF764RHO 248 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 153 bp overlap
ChIP endodermal cell ENCFF471YCZ 182 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 181 bp overlap
ChIP testis ENCFF128XQJ 289 bp overlap
DRGX 1 dataset
Motif DE_60h DE_60h-DRGX_MA1481.2 6 bp overlap
EMX1 1 dataset
Motif DE_60h DE_60h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_60h DE_60h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_60h DE_60h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 266 bp overlap
ESX1 1 dataset
Motif DE_60h DE_60h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_60h DE_60h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_60h DE_60h-EVX2_MA0888.2 6 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 122 bp overlap
ChIP DE DE-FOXA2-1 312 bp overlap
ChIP DE DE-FOXA2-2 312 bp overlap
GATA1 3 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 67 bp overlap
ChIP erythroblast ENCFF867JAR 312 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 285 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 312 bp overlap
ChIP DE DE-GATA4-2 312 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 309 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 312 bp overlap
ChIP DE DE-GATA6-2 312 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 312 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 273 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 207 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 312 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 312 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 301 bp overlap
GBX1 1 dataset
Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap
GCM1 1 dataset
Motif DE_60h DE_60h-GCM1_MA0646.2 10 bp overlap
GSX1 1 dataset
Motif DE_60h DE_60h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_60h DE_60h-GSX2_MA0893.3 7 bp overlap
HOXA1 1 dataset
Motif DE_60h DE_60h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_60h DE_60h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_60h DE_60h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif DE_60h DE_60h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_60h DE_60h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_60h DE_60h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_60h DE_60h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_60h DE_60h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
Hic1 1 dataset
Motif DE_60h DE_60h-Hic1_MA0739.2 8 bp overlap
ISX 1 dataset
Motif DE_60h DE_60h-ISX_MA0654.2 6 bp overlap
LBX1 1 dataset
Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_60h DE_60h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_60h DE_60h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_60h DE_60h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_60h DE_60h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_60h DE_60h-Lhx8_MA0705.2 6 bp overlap
MEOX1 1 dataset
Motif DE_60h DE_60h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_60h DE_60h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_60h DE_60h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_60h DE_60h-MNX1_MA0707.3 6 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 280 bp overlap
MYOG 2 datasets
Motif DE_48h DE_48h-MYOG_MA0500.3 8 bp overlap
Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NHLH1 2 datasets
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
Motif DE_60h DE_60h-NHLH1_MA0048.3 9 bp overlap
NKX6-2 1 dataset
Motif DE_60h DE_60h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_60h DE_60h-NOTO_MA0710.2 7 bp overlap
Neurod2 2 datasets
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nr2e3 1 dataset
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
Olig2 2 datasets
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PDX1 1 dataset
Motif DE_60h DE_60h-PDX1_MA0132.3 6 bp overlap
PHOX2B 1 dataset
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
POU6F1 1 dataset
Motif DE_60h DE_60h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
PRRX1 1 dataset
Motif DE_60h DE_60h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap
RAX2 1 dataset
Motif DE_60h DE_60h-RAX2_MA0717.2 6 bp overlap
RUNX3 2 datasets
Motif DE_48h DE_48h-RUNX3_MA0684.3 8 bp overlap
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
SHOX 1 dataset
Motif DE_60h DE_60h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 312 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 250 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 312 bp overlap
SOX21 1 dataset
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Shox2 1 dataset
Motif DE_60h DE_60h-Shox2_MA0720.2 6 bp overlap
TAL1 1 dataset
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 160 bp overlap
TEAD1 2 datasets
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
TEAD4 2 datasets
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
TLX2 1 dataset
Motif DE_60h DE_60h-TLX2_MA1577.2 6 bp overlap
Tcf12 2 datasets
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
UNCX 1 dataset
Motif DE_60h DE_60h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_60h DE_60h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_60h DE_60h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_60h DE_60h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_60h DE_60h-VSX2_MA0726.2 7 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Znf423 2 datasets
Motif DE_48h DE_48h-Znf423_MA0116.1 15 bp overlap
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap
mix-a 1 dataset
Motif DE_60h DE_60h-mix-a_MA0621.2 7 bp overlap