chr13 : 28,704,351 28,704,874
523 bp 44 TFs 4 linked genes
This 523 bp open chromatin element is linked to 4 target genes and is bound by 44 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SLC46A3 at TSS At TSS Proximity
POMP 45.4 kb Distal Multiome
MTUS2 115.8 kb Distal Multiome
FLT1 209.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:28,699,351 – 28,709,874
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 244 bp overlap
CDK9 1 dataset
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 171 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 203 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 225 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 163 bp overlap
ChIP BLaER1 ENCFF460KDD 245 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 341 bp overlap
ERG 2 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 159 bp overlap
ChIP aortic-endothelial-cell_D4 GSE139377.ERG.aortic-endothelial-cell_D4 65 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 118 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 61 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 297 bp overlap
ChIP DE DE-FOXA2-2 409 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 151 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 489 bp overlap
ChIP DE DE-GATA4-2 495 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 292 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 436 bp overlap
ChIP DE DE-GATA6-2 488 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 465 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 488 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 426 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 478 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 515 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 504 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 431 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 261 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 219 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 248 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 286 bp overlap
KLF11 1 dataset
Motif DE_48h DE_48h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
KLF9 1 dataset
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
KMT2A 2 datasets
ChIP MV4-11 GSE79899.KMT2A.MV4-11 136 bp overlap
ChIP THP-1 GSE79899.KMT2A.THP-1 77 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 235 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 365 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 227 bp overlap
MYCN 2 datasets
ChIP RH4 GSE83726.MYCN.RH4 230 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 122 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 273 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 291 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 338 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 156 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 194 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 201 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 168 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 506 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 523 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 412 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 523 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 349 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 421 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 495 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 132 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 195 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 523 bp overlap
SP3 1 dataset
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 252 bp overlap
TBX5 1 dataset
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 148 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 177 bp overlap
ZNF263 1 dataset
ChIP HEK293 GSE76494.ZNF263.HEK293 125 bp overlap
ZNF784 1 dataset
Motif DE_48h DE_48h-ZNF784_MA1717.2 8 bp overlap