chr12 : 96,372,974 96,373,613
639 bp 45 TFs 2 linked genes
This 639 bp open chromatin element is linked to CDK17 and ELK3 and is bound by 45 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CDK17 27.2 kb Distal Multiome
ELK3 178.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:96,367,974 – 96,378,613
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP K562 ENCFF343XWA 85 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 221 bp overlap
CEBPB 4 datasets
ChIP IMR-90 ENCFF468UGY 154 bp overlap
ChIP K562 ENCFF189VBN 212 bp overlap
ChIP K562 ENCFF584CTB 355 bp overlap
ChIP MCF-7 ENCFF772ZTQ 199 bp overlap
CTCF 2 datasets
ChIP endodermal cell ENCFF471YCZ 375 bp overlap
ChIP heart left ventricle ENCFF888ERQ 366 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 183 bp overlap
ChIP BLaER1 ENCFF274GAT 341 bp overlap
ChIP BLaER1 ENCFF364PUR 174 bp overlap
ChIP BLaER1 ENCFF896HSY 264 bp overlap
Crx 2 datasets
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 205 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 356 bp overlap
ESR1 2 datasets
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 175 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 60 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 371 bp overlap
ChIP DE DE-FOXA2-2 513 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 377 bp overlap
ChIP DE DE-GATA4-2 568 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 494 bp overlap
ChIP DE DE-GATA6-2 639 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 425 bp overlap
GSC 2 datasets
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF771OHZ 206 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 102 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 210 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 230 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 256 bp overlap
NR2F2 1 dataset
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 258 bp overlap
OTX1 2 datasets
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PITX1 2 datasets
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 226 bp overlap
RHOXF1 2 datasets
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 197 bp overlap
SP5 2 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 419 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 230 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 273 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 141 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 221 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 340 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF284DKY 108 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 444 bp overlap
ChIP K562 ENCFF875HLX 368 bp overlap
ZNF135 1 dataset
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF16 2 datasets
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF202 1 dataset
ChIP HEK293 ENCFF574FZA 83 bp overlap
ZNF24 2 datasets
ChIP GM12878 ENCFF688STO 294 bp overlap
ChIP K562 ENCFF615YYW 313 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 132 bp overlap
ZNF460 1 dataset
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 447 bp overlap
Zfp809 2 datasets
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap