chr12 : 96,256,842 96,257,316
474 bp 52 TFs 3 linked genes
This 474 bp open chromatin element is linked to ELK3, CDK17, and LTA4H and is bound by 52 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
ELK3 62.8 kb Distal Multiome
CDK17 143.3 kb Distal Multiome
LTA4H 221.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:96,251,842 – 96,262,316
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 3 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 154 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 111 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 99 bp overlap
ARID2 2 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 189 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 117 bp overlap
Ahr::Arnt 2 datasets
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
CTCF 1 dataset
ChIP U-937 ERP008568.CTCF.U-937 219 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 154 bp overlap
EP300 1 dataset
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 166 bp overlap
ERG 1 dataset
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 139 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 74 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 341 bp overlap
ChIP DE DE-GATA4-2 368 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 431 bp overlap
ChIP DE DE-GATA6-2 411 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 342 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 337 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 266 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 373 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 450 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 364 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 396 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 336 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 459 bp overlap
IFNA1 1 dataset
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 115 bp overlap
MTF1 2 datasets
Motif DE_36h DE_36h-MTF1_MA0863.1 14 bp overlap
Motif DE_48h DE_48h-MTF1_MA0863.1 14 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 119 bp overlap
MYOD1 3 datasets
ChIP RH4 GSE83726.MYOD1.RH4 169 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 136 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 124 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 437 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 174 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 96 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 86 bp overlap
POLR2A 11 datasets
ChIP GM12891 ENCFF127ICP 429 bp overlap
ChIP GM12891 ENCFF127ICP 328 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 250 bp overlap
ChIP endothelial cell of umbilical vein ENCFF303XUJ 461 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 287 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 474 bp overlap
ChIP sigmoid colon ENCFF748YVT 159 bp overlap
ChIP sigmoid colon ENCFF754JQR 245 bp overlap
ChIP spleen ENCFF044PYR 381 bp overlap
ChIP spleen ENCFF446ZGT 84 bp overlap
ChIP spleen ENCFF706IUS 178 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF508UTS 58 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 201 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 235 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 306 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 143 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 390 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 356 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 321 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 474 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 203 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 340 bp overlap
SREBF1 2 datasets
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap
STAT3 1 dataset
ChIP HepaRG_sodium-oleate GSE89157.STAT3.HepaRG_sodium-oleate 81 bp overlap
SUPT5H 2 datasets
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 326 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 110 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 194 bp overlap
TFAP2A 2 datasets
Motif DE_36h DE_36h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_48h DE_48h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 4 datasets
Motif DE_36h DE_36h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_36h DE_36h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_48h DE_48h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_48h DE_48h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 4 datasets
Motif DE_36h DE_36h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_48h DE_48h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_48h DE_48h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 2 datasets
Motif DE_36h DE_36h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_48h DE_48h-TFAP2E_MA1569.2 9 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 311 bp overlap
ZFP14 2 datasets
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
ZNF454 2 datasets
Motif DE_36h DE_36h-ZNF454_MA1712.2 17 bp overlap
Motif DE_48h DE_48h-ZNF454_MA1712.2 17 bp overlap
ZNF558 1 dataset
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
ZNF682 2 datasets
Motif DE_36h DE_36h-ZNF682_MA1599.2 11 bp overlap
Motif DE_48h DE_48h-ZNF682_MA1599.2 11 bp overlap
ZNF708 1 dataset
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Zfp335 2 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap