chr12 : 76,055,490 – 76,055,680
190 bp 46 TFs 1 linked gene
This 190 bp open chromatin element is linked to NAP1L1 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NAP1L1 5.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:76,050,490 – 76,060,680
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 190 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 156 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 180 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 95 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 102 bp overlap
CTCF 104 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 160 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 190 bp overlap
ChIP A549 ENCFF434LUY 187 bp overlap
ChIP AG04450 ENCFF116DJL 190 bp overlap
ChIP GM23338 ENCFF531QOI 190 bp overlap
ChIP GM23338 ENCFF772DML 183 bp overlap
ChIP GM23338 ENCFF832KWE 190 bp overlap
ChIP H1 ENCFF414GZI 177 bp overlap
ChIP H1 ENCFF764RHO 102 bp overlap
ChIP H9 ENCFF152GTF 190 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 190 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 190 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 190 bp overlap
ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 190 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 190 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 190 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 190 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 190 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 190 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 190 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 190 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 190 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 190 bp overlap
ChIP HFFc6 ENCFF005CJI 190 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 190 bp overlap
ChIP IMR-90 ENCFF887MRH 190 bp overlap
ChIP IMR-90 ENCSR000EFI.CTCF.IMR-90 171 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 117 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 190 bp overlap
ChIP MCF-7 ENCFF139NQI 190 bp overlap
ChIP MCF-7 ENCFF198DQX 171 bp overlap
ChIP MCF-7 ENCFF210JUZ 190 bp overlap
ChIP MCF-7 ENCFF494VXA 171 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 184 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 143 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 136 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 103 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 190 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 190 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 188 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 190 bp overlap
ChIP Panc1 ENCFF056JQX 190 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 102 bp overlap
ChIP VU-SCC-147 GSE143026.CTCF.VU-SCC-147 135 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 131 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 106 bp overlap
ChIP brain ENCFF163BBN 190 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 190 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 179 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 190 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 134 bp overlap
ChIP endodermal cell ENCFF471YCZ 181 bp overlap
ChIP endodermal cell ENCFF471YCZ 127 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 184 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 138 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 190 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 190 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 190 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 122 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 159 bp overlap
ChIP epithelial_mammary ENCSR000ALV.CTCF.epithelial_mammary 112 bp overlap
ChIP epithelial_mammary ENCSR000DUS.CTCF.epithelial_mammary 111 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 190 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 184 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 113 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 163 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 141 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 165 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 190 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 190 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 186 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 190 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 190 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 183 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 156 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 190 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 190 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 151 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 153 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 158 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 190 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 158 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 158 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 158 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 186 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 187 bp overlap
ChIP keratinocyte ENCFF805QIE 190 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 190 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 167 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 190 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 190 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 190 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 155 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 135 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 190 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 190 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 164 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 179 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 190 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 190 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 167 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 190 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 157 bp overlap
Dmrt1 2 datasets
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
Motif ES_0h ES_0h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 126 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 80 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 108 bp overlap
ESR1 3 datasets
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 145 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 171 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 177 bp overlap
EZH2 1 dataset
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 78 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 190 bp overlap
MEIS1 2 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 190 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 148 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 190 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 190 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 162 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 190 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 190 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 190 bp overlap
ChIP hESC GSE20650.NANOG.hESC 190 bp overlap
ChIP hESC GSE18292.NANOG.hESC 86 bp overlap
NCOA1 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 79 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR3C1 1 dataset
Motif ES_0h ES_0h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif ES_0h ES_0h-NR3C2_MA0727.2 15 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 79 bp overlap
POU3F2 1 dataset
ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 64 bp overlap
POU5F1 12 datasets
ChIP GM23338 ENCFF333SNB 137 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 190 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 190 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 190 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 127 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 178 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 190 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 109 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 190 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 190 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 169 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 175 bp overlap
RAD21 11 datasets
ChIP H1 ENCFF698EWO 189 bp overlap
ChIP H1 ENCFF967OJF 190 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 190 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 190 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 190 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 190 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 163 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 158 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 171 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 120 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 190 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
SCRT2 1 dataset
Motif ES_0h ES_0h-SCRT2_MA0744.3 10 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 177 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 183 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 181 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 190 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 158 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 115 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 190 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 183 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 190 bp overlap
SOX18 1 dataset
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 190 bp overlap
ChIP hESC GSE18292.SOX2.hESC 87 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 190 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 185 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 54 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 104 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 136 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 134 bp overlap
TFAP2C 4 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 170 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 154 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 190 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 190 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 178 bp overlap
ZNF667 2 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZSCAN16 2 datasets
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Motif ES_0h ES_0h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN29 2 datasets
Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap
Motif ES_0h ES_0h-ZSCAN29_MA1602.2 11 bp overlap
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