chr12 : 55,630,484 55,631,684
1,200 bp 41 TFs 9 linked genes
This 1.2 kb open chromatin element is linked to 9 target genes and is bound by 41 transcription factors.
Linked Genes
9 genes
Gene Expression Dist. to TSS Distance Link type
ITGA7 85.0 kb Distal Multiome
BLOC1S1 85.0 kb Distal Multiome
RDH5 90.1 kb Distal Multiome
CD63 98.6 kb Distal Multiome
GDF11 112.1 kb Distal Multiome
SARNP 186.7 kb Distal Multiome
ORMDL2 187.0 kb Distal Multiome
DNAJC14 198.5 kb Distal Multiome
PYM1 296.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:55,625,484 – 55,636,684
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ATF2 3 datasets
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 204 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 315 bp overlap
ChIP HepG2 ENCFF955VER 137 bp overlap
CTCF 19 datasets
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 170 bp overlap
ChIP endodermal cell ENCFF471YCZ 317 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 280 bp overlap
ChIP heart left ventricle ENCFF185CKY 276 bp overlap
ChIP heart left ventricle ENCFF354HOQ 311 bp overlap
ChIP heart left ventricle ENCFF548XHH 256 bp overlap
ChIP heart left ventricle ENCFF575JEQ 300 bp overlap
ChIP heart left ventricle ENCFF842XRG 271 bp overlap
ChIP heart left ventricle ENCFF987PUT 267 bp overlap
ChIP heart right ventricle ENCFF027ORH 318 bp overlap
ChIP heart right ventricle ENCFF435TKW 109 bp overlap
ChIP heart right ventricle ENCFF577TID 296 bp overlap
ChIP heart right ventricle ENCFF979TCT 340 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 243 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 229 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 257 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 330 bp overlap
ChIP right atrium auricular region ENCFF696NTN 203 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 120 bp overlap
ChIP BLaER1 ENCFF364PUR 94 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 415 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 374 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 238 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 291 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 96 bp overlap
Erg 1 dataset
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-FOXA2-1 703 bp overlap
ChIP DE DE-FOXA2-2 504 bp overlap
GABPA 1 dataset
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 779 bp overlap
ChIP DE DE-GATA4-2 893 bp overlap
ChIP foregut GSE117136.GATA4.foregut 581 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 786 bp overlap
ChIP DE DE-GATA6-2 900 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 981 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 723 bp overlap
ChIP foregut GSE117136.GATA6.foregut 351 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 311 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HSF1 5 datasets
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
ChIP HCT-116_A10_43 GSE152144.HSF1.HCT-116_A10_43 238 bp overlap
ChIP HCT-116_A8_43 GSE152144.HSF1.HCT-116_A8_43 224 bp overlap
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 180 bp overlap
HSF2 2 datasets
Motif DE_48h DE_48h-HSF2_MA0770.1 13 bp overlap
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
Motif DE_60h DE_60h-HSF4_MA0771.1 13 bp overlap
Irf1 1 dataset
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Mecom 2 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NKX2-2 2 datasets
Motif DE_48h DE_48h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 347 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 353 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 52 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 187 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 212 bp overlap
RARA 1 dataset
Motif DE_48h DE_48h-RARA_MA0730.1 17 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 252 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 616 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 484 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 397 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 414 bp overlap
SOX17_M 2 datasets
ChIP DE_D2 DED2-SOX17-M_Batch_II 549 bp overlap
ChIP DE_D2 DED2-SOX17-M_Batch_II 59 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 136 bp overlap
Stat2 2 datasets
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
TBX2 1 dataset
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX5 2 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 187 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 561 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
ZBTB1 1 dataset
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 154 bp overlap
ZBTB26 2 datasets
Motif DE_48h DE_48h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZNF136 2 datasets
Motif DE_48h DE_48h-ZNF136_MA1588.1 15 bp overlap
Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap