chr12 : 13,843,770 – 13,844,620
850 bp 59 TFs 0 linked genes
This 850 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:13,838,770 – 13,849,620
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
Arid3a 2 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif DE_24h DE_24h-Arid3a_MA0151.1 6 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
EOMES 4 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 379 bp overlap
EP300 1 dataset
ChIP GM12878 ENCSR000BHB.EP300.GM12878 121 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 183 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 622 bp overlap
ChIP DE DE-FOXA2-2 561 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 650 bp overlap
ChIP DE DE-GATA4-2 664 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 634 bp overlap
ChIP DE DE-GATA6-2 696 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 607 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 634 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 611 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 552 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 652 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 631 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 538 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 121 bp overlap
HOXB4 10 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXC13 4 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif DE_24h DE_24h-HOXC13_MA0907.2 9 bp overlap
Motif DE_36h DE_36h-HOXC13_MA0907.2 9 bp overlap
Motif DE_48h DE_48h-HOXC13_MA0907.2 9 bp overlap
HOXC4 10 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXD4 10 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 370 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 301 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 328 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 510 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 145 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 7 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_24h DE_24h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 816 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 243 bp overlap
ChIP hESC GSE18292.NANOG.hESC 172 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 355 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 393 bp overlap
NKX2-4 3 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
NKX6-1 6 datasets
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_36h DE_36h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_36h DE_36h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_48h DE_48h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_48h DE_48h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 4 datasets
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_24h DE_24h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
Nr2e3 3 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 190 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 182 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 238 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 282 bp overlap
POU4F2 3 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif DE_36h DE_36h-POU4F2_MA0683.2 15 bp overlap
Motif DE_48h DE_48h-POU4F2_MA0683.2 15 bp overlap
POU6F1 4 datasets
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif DE_24h DE_24h-POU6F1_MA1549.2 7 bp overlap
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
POU6F2 7 datasets
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 202 bp overlap
RARA 4 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_24h DE_24h-RARA_MA0729.1 18 bp overlap
Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap
Motif DE_48h DE_48h-RARA_MA0729.1 18 bp overlap
RARA::RXRA 4 datasets
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_24h DE_24h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_36h DE_36h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_48h DE_48h-RARARXRA_MA0159.1 17 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 541 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 274 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 385 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 461 bp overlap
SMARCA4 3 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 359 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 228 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 296 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 273 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 483 bp overlap
SOX10 3 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 333 bp overlap
SREBF1 4 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_24h DE_24h-SREBF1_MA0595.1 10 bp overlap
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap
SREBF2 4 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
STAT1::STAT2 3 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 318 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 221 bp overlap
TBR1 3 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX19 4 datasets
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
Motif DE_24h DE_24h-TBX19_MA0804.2 17 bp overlap
Motif DE_36h DE_36h-TBX19_MA0804.2 17 bp overlap
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
TBX2 3 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX3 3 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX5 1 dataset
ChIP G296S_4 GSE85628.TBX5.G296S_4 152 bp overlap
TBXT 4 datasets
Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap
Motif DE_24h DE_24h-TBXT_MA0009.2 16 bp overlap
Motif DE_36h DE_36h-TBXT_MA0009.2 16 bp overlap
Motif DE_48h DE_48h-TBXT_MA0009.2 16 bp overlap
ZBTB26 3 datasets
Motif DE_24h DE_24h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_48h DE_48h-ZBTB26_MA1579.2 8 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF324 3 datasets
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
ZNF528 2 datasets
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
ZNF652 3 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
ZNF675 4 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif DE_24h DE_24h-ZNF675_MA1714.2 19 bp overlap
Motif DE_36h DE_36h-ZNF675_MA1714.2 19 bp overlap
Motif DE_48h DE_48h-ZNF675_MA1714.2 19 bp overlap
Zfp809 3 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
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