chr12 : 7,695,685 – 7,695,890
205 bp 44 TFs 1 linked gene
This 205 bp open chromatin element is linked to GDF3 and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GDF3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:7,690,685 – 7,700,890
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
BCL11A 1 dataset
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 56 bp overlap
ELF1 2 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 104 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 138 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 205 bp overlap
ERG 15 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 187 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 205 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 148 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 134 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 87 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 180 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 194 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 159 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 92 bp overlap
ChIP aortic-endothelial-cell_D4 GSE139377.ERG.aortic-endothelial-cell_D4 205 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 205 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 164 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 79 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 119 bp overlap
ChIP arterial-endothelial-cells GSE128382.ERG.arterial-endothelial-cells 91 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 102 bp overlap
ETS1 4 datasets
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 158 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 139 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 147 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 159 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 165 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 144 bp overlap
GATA2 5 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 105 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 170 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 205 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 140 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 185 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 205 bp overlap
ChIP DE DE-GATA4-2 205 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 142 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 205 bp overlap
ChIP DE DE-GATA6-2 205 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 205 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 205 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 205 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 205 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 205 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 205 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 205 bp overlap
HSF1 1 dataset
ChIP MO91 GSE45852.HSF1.MO91 162 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 205 bp overlap
ChIP K562 ENCFF348IBL 205 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 142 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 136 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 110 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 205 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 143 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 183 bp overlap
NFIB 4 datasets
ChIP MCF-7 ENCFF799WGQ 205 bp overlap
ChIP MCF-7 ENCFF925CGH 178 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 138 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 176 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 163 bp overlap
ChIP K562 ENCFF167YID 145 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 186 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 205 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR168SMX.NR2F2.liver 127 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 173 bp overlap
POLR2A 2 datasets
ChIP breast epithelium ENCFF960NNA 153 bp overlap
ChIP spleen ENCFF044PYR 106 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 205 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 205 bp overlap
PROX1 1 dataset
ChIP HUVEC-C_Prox1OE GSE71230.PROX1.HUVEC-C_Prox1OE 168 bp overlap
RELA 11 datasets
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 61 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 118 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 138 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 58 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 124 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 99 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 205 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 59 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 175 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 138 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 205 bp overlap
REST 2 datasets
ChIP HL-60 ENCSR000BTF.REST.HL-60 113 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 115 bp overlap
RUNX1 4 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 107 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 107 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 143 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 118 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 128 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 205 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 205 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 205 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 205 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 190 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 205 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 205 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 205 bp overlap
SMARCA4 1 dataset
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 83 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 153 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 205 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 205 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 205 bp overlap
SRF 4 datasets
ChIP GM12878 ENCFF878IIX 205 bp overlap
ChIP GM12878 ENCSR000BMI.SRF.GM12878 83 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 91 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 140 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 205 bp overlap
ZNF18 4 datasets
ChIP HEK293 ENCFF066NGR 205 bp overlap
ChIP HEK293 ENCFF066NGR 86 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 197 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 144 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 56 bp overlap
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