chr9 : 127,253,417 127,253,754
337 bp 34 TFs 1 linked gene
This 337 bp open chromatin element is linked to GARNL3 and is bound by 34 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GARNL3 8.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:127,248,417 – 127,258,754
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 337 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 153 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 109 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 91 bp overlap
ChIP K562 ENCFF673OEZ 241 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 307 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 266 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 161 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 102 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 292 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 337 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 337 bp overlap
ChIP DE DE-GATA4-2 337 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 337 bp overlap
ChIP DE DE-GATA6-2 337 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 337 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 337 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 337 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 337 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 337 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 320 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 337 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 321 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 337 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 337 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 337 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 263 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 136 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 262 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 223 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 104 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 337 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 337 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 337 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 193 bp overlap
ChIP hESC GSE18292.NANOG.hESC 106 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 233 bp overlap
NFE2L2 1 dataset
ChIP A-375_DMSO GSE57431.NFE2L2.A-375_DMSO 216 bp overlap
POU5F1 4 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 271 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 337 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 275 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 313 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 337 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 337 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 337 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 337 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 337 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 210 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 249 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 337 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 337 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 101 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 337 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 294 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 194 bp overlap
SPI1 1 dataset
ChIP K-562 GSE70482.SPI1.K-562 113 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 201 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 112 bp overlap