chr9 : 6,648,431 – 6,648,592
161 bp 48 TFs 3 linked genes
This 161 bp open chromatin element is linked to ENSG00000236924, GLDC, and RPL23AP57 and is bound by 48 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000236924 2.6 kb Proximal Proximity
GLDC 2.7 kb Proximal Proximity
RPL23AP57 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:6,643,431 – 6,653,592
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 80 bp overlap
CEBPA 1 dataset
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 127 bp overlap
CEBPB 4 datasets
ChIP H1 ENCFF871PTR 112 bp overlap
ChIP HeLa-S3 ENCFF722WEG 84 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 59 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 50 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 63 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 116 bp overlap
ESR1 4 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 51 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 58 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 80 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 73 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 127 bp overlap
FOS::JUN 1 dataset
Motif ES_0h ES_0h-FOSJUN_MA0099.4 9 bp overlap
FOS::JUND 1 dataset
Motif ES_0h ES_0h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 1 dataset
Motif ES_0h ES_0h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1::JUN 1 dataset
Motif ES_0h ES_0h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 1 dataset
Motif ES_0h ES_0h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL1::JUND 1 dataset
Motif ES_0h ES_0h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2::JUN 1 dataset
Motif ES_0h ES_0h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 1 dataset
Motif ES_0h ES_0h-FOSL2JUNB_MA1138.2 9 bp overlap
FOXA1 1 dataset
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 58 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 132 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 61 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF824TGK 146 bp overlap
IKZF2 2 datasets
ChIP GM12878 ENCFF918AID 146 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 83 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 80 bp overlap
KLF4 3 datasets
ChIP WA09 GSE105028.KLF4.WA09 161 bp overlap
ChIP WIBR3 GSE130417.KLF4.WIBR3 103 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 161 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 161 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 161 bp overlap
ChIP H1 ENCFF747ZPQ 161 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 161 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 161 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 130 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 161 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 161 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 161 bp overlap
ChIP hESC GSE20650.NANOG.hESC 161 bp overlap
ChIP hESC GSE18292.NANOG.hESC 112 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 91 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 161 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 161 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 161 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 12 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 161 bp overlap
ChIP GM23338 ENCFF333SNB 161 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 161 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 161 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 161 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 126 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 104 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 161 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 161 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 161 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 161 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 161 bp overlap
POU5F1B 1 dataset
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
RELA 18 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 161 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 92 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 110 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 153 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 135 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 158 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 126 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 159 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 76 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 138 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 99 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 131 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 138 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 111 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 144 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 161 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 161 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 135 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 116 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 161 bp overlap
SMARCB1 6 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 110 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 127 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 50 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 52 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 153 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 161 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 161 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 161 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 112 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 161 bp overlap
STAT3 6 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 71 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 73 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 56 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 132 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 70 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 100 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 61 bp overlap
TEAD4 2 datasets
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 79 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 99 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 161 bp overlap
ZNF547 1 dataset
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
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