chr7 : 5,779,147 5,779,439
292 bp 39 TFs 1 linked gene
This 292 bp open chromatin element is linked to RNF216 and is bound by 39 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RNF216 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:5,774,147 – 5,784,439
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 257 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 213 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 112 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 209 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 224 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 191 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 292 bp overlap
ChIP DE DE-FOXA2-2 260 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 200 bp overlap
GATA2 8 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 172 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap
ChIP SH-SY5Y ENCFF485YIB 292 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 290 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 292 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 213 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 234 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 166 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE51274.GATA3.MCF-7 251 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 160 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 260 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 292 bp overlap
ChIP DE DE-GATA4-2 292 bp overlap
ChIP foregut GSE117136.GATA4.foregut 266 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 218 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 292 bp overlap
ChIP DE DE-GATA6-2 292 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 292 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 292 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 292 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 292 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 292 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 292 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 292 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 129 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 109 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 140 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 200 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 187 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 292 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 286 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 157 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 155 bp overlap
MAX 1 dataset
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 85 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 85 bp overlap
NCOR2 1 dataset
ChIP AML_shaml1-eto GSE131939.NCOR2.AML_shaml1-eto 86 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 292 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 273 bp overlap
RUNX1 2 datasets
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 112 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 136 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 163 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 292 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 292 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 261 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 292 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 292 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 190 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 271 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 292 bp overlap
SPI1 3 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 238 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 158 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 95 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 245 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 159 bp overlap
ChIP Kasumi-1 GSE43834.TCF12.Kasumi-1 134 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 289 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 205 bp overlap